Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01174 ATGGCACACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAACGTTCCGATTTTCCCATCATCTGCGAATCCTGCCTCGGGGACAGCCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTGTTTAGATGGAGACCTGGTAGAGATGCTAGATATAAGAAAACTGAGATATGTCAGACATGTAGTAAATTGAAAAATGTCTGCCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCGGTTCAAGTCCGAGACACCGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAAAGTGACGTCAATAGGGAGTATTTTGCTGAAGAACATGACCGTAGGAATAAAAGCATGGTGCAGGCTAGAGCTGGTTTGGATTATGAGTCCTCTTATGGCAAAGCACGCCCTAATGATACTATCCTGAAGCTTCAAAGAACAACCCCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTATATAAGGGGTGAGTGTACCAGAGGAGCTGAGTGCCCTTACAGACACGAGATGCCAGAGACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAAGCAGGGGAGATGGCCACTCTGGAGGCTCCTGAAGACGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCTATAAAAATGGTTCTGCAACGAGCTTGTGCTTTTGTATCATATACTACAAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCGAACAAACTGGTTATTAAGGGCCTAAGACTGAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCGGATGGCTCTGATCAAGCAAGGCAGCAAGCATCTGTTGCTCATAGTGGATTGTTGCCTCGGGCGGTTATATCACAGCAGCAGAACCAGGACCAAACTCAAGGAACATTTTTCTATAACAATCCACCGCCTCTGCAGCAGGACAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTTCCTCTCAAGATGGTCCTCCTGCTGGGCCTTCTGGGTCAGGTGAGAACAAGTCCAGTTTGGAGAAGCAGCACATGCAACACTATGCCCGCCCAATGATGCCTCCTCCACCTGGCCAATATCACCATCAGTATTACTCTCCATATGGTTATATGCCATCAGTTCCCCCTTATCAACAGTACCCACCACCTCCATACAATACTGCTGTTGCTCCACCTCAGCCGCCAGCTGCAAATCATCCTTATCAGCATTCTACGCAACCAGGGTCTTCACAGACAGGGTCTGGACAGGCTGCACATGCCTCAGCTGAATCTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1476 0.4722 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRNKSMVQARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGTFFYNNPPPLQQDRSYYPSMDPQRMGALISSQDGPPAGPSGSGENKSSLEKQHMQHYARPMMPPPPGQYHHQYYSPYGYMPSVPPYQQYPPPPYNTAVAPPQPPAANHPYQHSTQPGSSQTGSGQAAHASAESGTSTSGSQQQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01174 491 SUPERFAMILY RNA-binding domain, RBD 228 316 IPR035979 GO:0003676
Lapu8g01174 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 307 IPR000504 GO:0003723
Lapu8g01174 491 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Lapu8g01174 491 Pfam Torus domain 142 200 IPR032297 -
Lapu8g01174 491 MobiDBLite consensus disorder prediction 305 327 - -
Lapu8g01174 491 MobiDBLite consensus disorder prediction 340 366 - -
Lapu8g01174 491 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Lapu8g01174 491 FunFam Zinc finger CCCH domain-containing protein 40 219 315 - -
Lapu8g01174 491 CDD RRM_RBM22 233 306 - -
Lapu8g01174 491 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 392 IPR039171 GO:0003723
Lapu8g01174 491 MobiDBLite consensus disorder prediction 430 491 - -
Lapu8g01174 491 MobiDBLite consensus disorder prediction 340 417 - -
Lapu8g01174 491 FunFam Zinc finger CCCH domain-containing protein 4 155 214 - -
Lapu8g01174 491 SMART rrm1_1 235 303 IPR000504 GO:0003723
Lapu8g01174 491 SUPERFAMILY CCCH zinc finger 165 188 IPR036855 GO:0046872
Lapu8g01174 491 MobiDBLite consensus disorder prediction 431 455 - -
Lapu8g01174 491 Gene3D - 155 211 - -
Lapu8g01174 491 MobiDBLite consensus disorder prediction 456 491 - -
Lapu8g01174 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 294 IPR000504 GO:0003723
Lapu8g01174 491 Gene3D - 218 316 IPR012677 -
Lapu8g01174 491 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01174 Lapu-Chr8 29540520 29544816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01174 221 295 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 4.62e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01174 K12872 - gmx:100778975 848.195