Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01172 ATGCAATCAAAATCTGAAACTGCTAATCAGCTGAGGCCTAATCCACCTTCCTTTACACCTACCAATGTTTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATTCTGTTCCGCAAGCAATGTCAGGGGTGAATGCATCAAATTCATCTTCACTTGAACGCCCTAATGGCGATTCAGAATCCAGTGAAGGTCAATCTTTGTCCAATAATGGGTTGAATGAGGAAGACGACGACGCTGCCAAAGAATCGCAACCCACTGCTCCTAACCAATCAGGAAATTATGGACAAGACCACCAAGCGATGCTGCATTCTTCATCATCTGCACCTGCGAGGCGTGAAGACTGCCTTACACATGCTCCACAGCTGGAACTTATTGGCCATTCATTTGGGTATGCTCCTTTTATCGGAATGCCTCATCCCAGAATGGCTTTGCCACTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCGCGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTGGAGGCTTCAAACCACGCGAACAAGGAAAAGGACATGGGTGCAGGTCCAGTCCCATTGCCACAGTCAGTTAATTCATCTGGTTTAGGACCAGTATCCTCTGATTCTGCTAAGACCTGGAACTCCCCCAGTGTGCAACAAGACACAAGAGGATCTCAAGCGCATGAGAGATTTGAAAAACACAACTATGCCAATGTTTTGCAGTCATCATCTACATTTTGTTTGCACTCGGGTGAGAGAGTAGAGGAAGGGGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 957 0.4608 MQSKSETANQLRPNPPSFTPTNVYSEPWWRGIQYNSVPQAMSGVNASNSSSLERPNGDSESSEGQSLSNNGLNEEDDDAAKESQPTAPNQSGNYGQDHQAMLHSSSSAPARREDCLTHAPQLELIGHSFGYAPFIGMPHPRMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHANKEKDMGAGPVPLPQSVNSSGLGPVSSDSAKTWNSPSVQQDTRGSQAHERFEKHNYANVLQSSSTFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01172 318 MobiDBLite consensus disorder prediction 299 318 - -
Lapu8g01172 318 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 276 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 MobiDBLite consensus disorder prediction 40 112 - -
Lapu8g01172 318 MobiDBLite consensus disorder prediction 40 73 - -
Lapu8g01172 318 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 MobiDBLite consensus disorder prediction 213 274 - -
Lapu8g01172 318 Gene3D - 149 211 - -
Lapu8g01172 318 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Lapu8g01172 318 MobiDBLite consensus disorder prediction 231 262 - -
Lapu8g01172 318 MobiDBLite consensus disorder prediction 83 106 - -
Lapu8g01172 318 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Lapu8g01172 318 MobiDBLite consensus disorder prediction 290 318 - -
Lapu8g01172 318 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01172 Lapu-Chr8 29529483 29533617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01172 23 253 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.360 1.35e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu8g01172 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01172 K08064 - gmx:102664020 540.806