Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01150 ATGAACCCTCCACGACGGCAGTCACAAGTTGGTGAAGGACTACAAACTTCTCTATCCCTAGTTTCTTCAGATCCCCGCCTTTCCCTTGAGGAGCCTAGATCAAACACTGGCAATCTCCGTGAATCTCCCACCGAAAGTGCCAGTTCTCGGGAAGTTTGGCCTATTGCTGCTGCAATAAAAAAGGAGAGTGATTGCCCTGATCAGTCAGTTATACGTCGTGTTTCTGGTGCTGACAAAATTACTCTTCATGACGTTGCAAGAGAACGAGTTGATGTAATATGTGAGAAAATGATTCATCTACCTTCTGAGTTTCTTGACGAACTGAAAAATGGACTTCGAGTTATCCTTGAAGGAGGGAATGGCTCGCAACATAGAGAGGAATTTTTTATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAACCAATACATTGGCAAGAACACATCGTGTGCAGCTCGAAATCCTTGTTGCCATAAATACGGGAATTCAGGGATTTTTACATCCTAGCATCAATCTATCTCAGGCTTCATTGATTGAGATATTTCTATACAAGAGATGCAGAAACCTAGCTTGTCAGAGCCAGCTTCCTGCCGAAGATTGTACCTGTGAGACATGCGCCAATGGAAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACCGATTGTGCCATTCGTGAGCAACTTATTTGTATGGGCCCTGCTACACAGAATGGAACAGGGCTAAGTGAAATGGTTTTTAAGTGTCAAGCATGCAATAGGACTTCAGAACTGCTGGGTTGGGTTAAAGATGTCTTCCAACATTGTGTACAGTCATGGGATGGAGATGCCCTGATTAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGAGGGAGGAAACTCCATTGGAAATGTGATGATCTCAAGGAAAATTTAAAAAGTGGGAAAGTGGAATCTAAGGCAGCATGCAAGGCAATATTGATGGTTTTCAAAGAGCTTGAGCTGGATTCTCAAAAGACCCTGGAAAATGCTGAAAGTGAAAGTGGAAGACTGATTGCTCCTCAGGAGGCATGCAATAGAATTTCAGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCCAATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTGAACATGGATAGACAAAAGAAGAAGTTAGAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGATGAAGGCTAATGAAGCTAAAAGAGAATCTGAGAAGCTGCAGAGGATTCTTCTTGCCAAGTCAGATAAATCAGAAGAAGAATATACCAGCAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAGTATCTGTATGAGAAGATGAAAATGCAGGAGGCTTCTCGTTTATTGCAAAGCAATGGTGGTGGCGGTGACCCCTTGATGTTTTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAGTGCAGATGGTTCGTCTAATGACTGCCATCCTTTTAGAACAAACCCATAA 1683 0.4248 MNPPRRQSQVGEGLQTSLSLVSSDPRLSLEEPRSNTGNLRESPTESASSREVWPIAAAIKKESDCPDQSVIRRVSGADKITLHDVARERVDVICEKMIHLPSEFLDELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTTNTLARTHRVQLEILVAINTGIQGFLHPSINLSQASLIEIFLYKRCRNLACQSQLPAEDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPATQNGTGLSEMVFKCQACNRTSELLGWVKDVFQHCVQSWDGDALIRELDFVSRIFHGSKDPRGRKLHWKCDDLKENLKSGKVESKAACKAILMVFKELELDSQKTLENAESESGRLIAPQEACNRISEVVHEAVRNMEMVANEKMRMFKKARLSFDACERELADKAREAGELNMDRQKKKLEIEELERIVRLKNAEADMFQMKANEAKRESEKLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKMKMQEASRLLQSNGGGGDPLMFSKIHDLLYSVPPSADGSSNDCHPFRTNP* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01150 560 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 28 540 IPR004082 -
Lapu8g01150 560 Pfam Coiled-coil region of Oberon 408 539 IPR032535 -
Lapu8g01150 560 MobiDBLite consensus disorder prediction 1 49 - -
Lapu8g01150 560 Coils Coil 428 483 - -
Lapu8g01150 560 CDD PHD_OBE1_like 218 277 IPR047578 -
Lapu8g01150 560 MobiDBLite consensus disorder prediction 1 50 - -
Lapu8g01150 560 Pfam PHD - plant homeodomain finger protein 188 311 IPR032881 -
Lapu8g01150 560 PIRSF UCP025218 1 546 - -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 225 245 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 96 118 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 298 317 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 179 200 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 138 153 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 153 168 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 443 463 IPR004082 -
Lapu8g01150 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 504 IPR004082 -
Lapu8g01150 560 SMART PHD_3 218 278 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01150 Lapu-Chr8 29359286 29362535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01150 188 321 PHD Gene Family AT5G57380 26.119 1.75e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01150 - - pvu:PHAVU_008G285600g 1031.17