Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01145 ATGGTTTCTTCAGACAAAAGTGTAGATCAAAATATTCCTTCTGATAAATTGCAGCATAGAGGGAGTCCTGATAGTGATGTTACCTTGTCACAAGGTCATGATACTAAAAGTGATGTATCCAAACCAGAGGGAGCAACAAGTACTCCTTCTGTTGTAGCTAAAAATGAAGAGGGGAAGGACTCTGATGCTACTGCTTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCATTCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACACGTCAAGGGGAATGAATTTATACGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAACAATTGCAGCAGTCAAATAACGGGAATATCACAGATTGCGTTTGTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTGCCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATCTGAAAGAAAAAACATTCGTTGAGCAAGGATGTATGCCTCATCAGATCAAGCCTTTACAGTCCCTTCCGACTACAAAAGTGTCCCCAGTAAATGAGTTGAAAGCTGCACATTTACAATCGTCTAAGGCAAGGAATCAGGTTCATGACAATGAGGATCCCGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTCGATGCCACTGGAGTGAACATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCACGTGGAAAGGGCCTCTCATGATTCAAAAATCGTAATAACTACCTATGAGGGACAACATGATCATGAACTACCCCCTGGAAGGACTGTCAGTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGGAAGGCAGGAACCAAATCTGAAGATACTACTGTTAATAGAGGGGAACACAGTGGCTTGGACTCAGCAAGCAAATTAACAGAGGAACTAAATGGCAAGTCAATTACTAAGTCAGAGGTCGGTGATAGCCTTTCCAATGAGGGTCTTGAAATTAAATTAAATGAGCAACAACAAAAAGATAACTCAGGTACTAAAGATGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGACTTCCGTGTAGATCAAATGAACAGCTGAAAGGTGAGGTAAAACCTTTATCAGAAGGAACAAAGGATTGCCTTAACAAGGTTGCCGTTCATGATACTCCTAGTACAGAAAGCGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCAGTCCACAGCTAA 1500 0.4167 MVSSDKSVDQNIPSDKLQHRGSPDSDVTLSQGHDTKSDVSKPEGATSTPSVVAKNEEGKDSDATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLHSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVCIGQHNHPRPQLNSTVSVECVLPVVEQAARKPLLANLKEKTFVEQGCMPHQIKPLQSLPTTKVSPVNELKAAHLQSSKARNQVHDNEDPESKRLKKDNSNVDATGVNMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVSHNAATNTHTTTMNGKAGTKSEDTTVNRGEHSGLDSASKLTEELNGKSITKSEVGDSLSNEGLEIKLNEQQQKDNSGTKDDSVSNDVICHSSSGLPCRSNEQLKGEVKPLSEGTKDCLNKVAVHDTPSTESEFNKQSAADAEPVHS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01145 499 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 MobiDBLite consensus disorder prediction 1 54 - -
Lapu8g01145 499 MobiDBLite consensus disorder prediction 242 261 - -
Lapu8g01145 499 MobiDBLite consensus disorder prediction 93 107 - -
Lapu8g01145 499 MobiDBLite consensus disorder prediction 383 409 - -
Lapu8g01145 499 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 366 IPR044810 GO:0003700
Lapu8g01145 499 MobiDBLite consensus disorder prediction 68 83 - -
Lapu8g01145 499 FunFam WRKY transcription factor 101 173 - -
Lapu8g01145 499 MobiDBLite consensus disorder prediction 353 375 - -
Lapu8g01145 499 MobiDBLite consensus disorder prediction 474 499 - -
Lapu8g01145 499 FunFam WRKY transcription factor 57 274 348 - -
Lapu8g01145 499 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 MobiDBLite consensus disorder prediction 1 109 - -
Lapu8g01145 499 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 MobiDBLite consensus disorder prediction 233 270 - -
Lapu8g01145 499 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01145 499 MobiDBLite consensus disorder prediction 340 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01145 Lapu-Chr8 29317924 29321626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01145 107 379 WRKY Transcription Factor Family AT2G04880 48.201 4.18e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu8g01145 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01145 K18834 - gmx:100781219 820.076