Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01143 ATGCCTGCAGAGAAGTCGAACAGTTGCGACACCGAAGTGGAAGCGTTCGTGGAGGTTGATCCCAAGGGAAGATTTGGGCGTTACAACGATCTTCTTGGTTGTGGAGCTGTGAAGAAGGTTTACAGAGCTTTTGATCAAGAGGAAGGAATTGAGGTGGCGTGGAATCAGGTTCGTCTCAGGAATTTCAGCGAAGACCCTGTTCTCATCAATCGCCTTCATTCCGAGGTTGAGTTGCTCAGAACCCTCAGCAACAAGTACATCATCGTCTGTTACAGTGTTTGGAAGGATGAGGAACGCCACAACATCAATTTCATCACTGAGATTTGCACTTCCGGGAACCTCAGGGATTACCGCAGGAAGCACCGCCATGTCTCCATTAAGGCATTCAAGAAGTGGTCCAAACAGGTCCTTGAGGGGTTGGAGTATCTTCATACTCATGACCCATGCATCATTCACAGGGATCTCAATTGCAGCAACATCTTTGTTAACGGCAACATTGGCCAGGTGAAAATTGGTGATCTTGGATTGGCTGCAATAGTGGGAAGGAACCATGCTGCACATTCAATTTTAGGGACGCCTGAATACATGGCACCGGAGCTGTACGAAGAAGATTACACTGAGATGGTGGACATATATTCTTTTGGAATGTGTTTGCTTGAAATGGTTACAACGGAGATACCCTACAGCGAATGTGACAGTGTGGCAAAGATATACAAAAAGGTCACCATGGGAATTAAGCCTCAGGCATTGAACAAAGTCACAGAACCTGAGGTGAAGGAATTCATTGAGAAGTGCATAGCACAGCCAAGGGCAAGACCTTCAGCCACGGATCTCCTTAAAGATCCTTTCTTTTATGAACTCAACAATGATGAAGAATGA 879 0.4596 MPAEKSNSCDTEVEAFVEVDPKGRFGRYNDLLGCGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVELLRTLSNKYIIVCYSVWKDEERHNINFITEICTSGNLRDYRRKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRNHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTTEIPYSECDSVAKIYKKVTMGIKPQALNKVTEPEVKEFIEKCIAQPRARPSATDLLKDPFFYELNNDEE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01143 292 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01143 292 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Lapu8g01143 292 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01143 292 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Lapu8g01143 292 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Lapu8g01143 292 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Lapu8g01143 292 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 287 - -
Lapu8g01143 292 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01143 Lapu-Chr8 29310467 29312760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01143 10 284 MAP Kinase Kinase Kinase AT5G55560 77.818 7.79e-169 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lapu8g01143 Pkinase 3.1e-51 CL0016