Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01140 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACCGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCCGACCCTGCTGTCGCTGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGAACATACTGAGTAGAAACAGTGGTAGCATCCATGGTTCACCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGTGATTTCAAGAAATACTTTGATCAGTTTGGGACTATAACAGATGTGGTAGTTATGTATGATCACAACACTCAGAGGCCAAGGGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACTAAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTAAAGCGAGCAGTTCCTAAGGAATTATCACCCGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTTAGTAGGGTCAATAGTTTCTTAAATGGCTTTACTCAGGGGTATAGTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCTGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGCTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGAGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGGCGGGGAGTAAATCCTTATTTTATTGGCAACTCCAACAGGTTTGGCAGTCCTGTTGGATTTGAAAGTGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGGAGTGGAAGTATTGGTGGGAATACATTTGGCAACACTGGAGTCAACTGGGGTGGTTCTTCAGCAATTTCTGGTCAGGGAGGAGGGAACAACATGTCACAAAGTAGTGCCAACCTGGGATATGGAAGTGGTGACAATAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCAACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGGGCCTTTGCAGACTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGCTCTTCAAATTCTGAGAGAGATGGACCTGGTCCCTTCGGTTATGGACTTGGTGGAGCAGCTTCTGATGTTTCTACCAAGACTTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATTGCGACATAG 1440 0.441 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGNSNRFGSPVGFESGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSIGGNTFGNTGVNWGGSSAISGQGGGNNMSQSSANLGYGSGDNNYGLGTGGYGRNTGTTFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGPGPFGYGLGGAASDVSTKTSPGYVGGYTVNKRQPNRGIAT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01140 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lapu8g01140 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Lapu8g01140 479 Gene3D - 4 88 IPR012677 -
Lapu8g01140 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lapu8g01140 479 MobiDBLite consensus disorder prediction 454 479 - -
Lapu8g01140 479 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Lapu8g01140 479 Gene3D - 103 189 IPR012677 -
Lapu8g01140 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lapu8g01140 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Lapu8g01140 479 CDD RRM2_Hrp1p 107 184 - -
Lapu8g01140 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lapu8g01140 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lapu8g01140 479 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Lapu8g01140 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lapu8g01140 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lapu8g01140 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01140 Lapu-Chr8 29284531 29291229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01140 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 6.78e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01140 K14411 - gmx:100795907 853.588