Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu8g01115 | ATGGCGCAGCTTCCATGTGACTCAGAGGGCATCTGCATGCGCTGCAAGGAGAAGCCCCCTTCCTCCCAAACCCTCTCCTGCCGCACCTGCGCCACCCCATGGCACCTTGCTTGCCTCCCCTCCCCTCCCCTCTCCGTTTCCGACTCCCACTGGGACTGCCCCGACTGCTCCGATCTCTCCGACATCCACCCAGTCGCCCCCTCCGACAACATTGTCTCCGCCATCCACGCCATTCAGGCAGACCAATCTCTCTCTGAAGAAGAGAAGGCCAAAAGACGCCAAGAACTACTTGCTGGTTCCTCGGATCCGTCCAAGGACATAGCTACATCTTCAGATATGTTCGATGGAAGCTTTAACTGTTCTATCTGCAGGCAACTACCTGATAGGCCTGTTACGACGCCCTGTGGACATAACTTCTGCTTGAGATGCTTTGAGAAATATATTGCTCAGGGGAGGCGCACCTGTGCGAATTGCCGTGCTCAAATACCTGCAAAGATGTCGAGTCAGCCGAGAATTAACTGGCAATTGACTGTGGCTATTCGATTGGCTAAGCAAGTTAAGTCTGGGAGTTCTTCGGGGCCACCTAAAGTGTATCACTTTTTGCGCAATCAGGATCGTCCAGATACTGCTTTTACAACTGAGCGAGCCAAGAAGACTGGGAAAGCTAATGCCTGTAGCGGTAAGATTTTTGTTACTGTGCCACCCGACCATTTTGGACCTATTCCAGCCGACAATGATCCCAAGAGGAATCGCGGTGTTTTGGTTGGTGACACGTGGGAGGACAGGATGGAATGTCGGCAATGGGGTGCTCATTTACCTCATGTTGCGGGCATTGCTGGACAGAGTAGTTATGGTGCCCAGTCGGTTGCCCTTTCAGGTGGTTACGTGGATGACGAGGACCATGGCGAATGGTTCCTTTACACTGGCAGTGGTGGAAGAGATCTAAGTGGTAACAAACGCACAAACAAACTTCAATCCTTTGACCAGAAGTTTGAAAACATGAATGAGGCCTTGAGAGTTAGCTGCCGAATGGGTTATCCTGTTCGGGTTGTAAGGTCACATAAGGAAAAACGTTCTTCTTATGCACCCGAATCTGGGGTGCGTTATGATGGGGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAATACAAGGCTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCTGCACCATGGACAAGTGATGAATATGGAGACCGTCCACGCCCACTGCCTAAGATTGAGGAGTTGGAAGGTGCAATTGATATAACTGAAAGGAAGGGCGGTCCATCGTGGGATTTTGATGAAGATAAGGGGTGCTGGTTGTGGAAGAAGCCTCCTCCAGAAAGCAGGAAATCAGTGGACGATGGGACAACAGTCAGGGTTAAACGGAAAGCAAAAGAAGTGTCTGTGAGAGAAACTCTACTGAAAAGGTTTGGTTGTGGAATATGCAACCATGTCTTGGCTTTCCCTCTTACTACACCTTGTTGTGCTAGCAACTTCTGCAAAGCCTGTTTGGAGGGTGTCTTTTCTGGCAAAAGTTTCATCAGGGAAAGGGGAGGTGGAGGTGGACGCTCTTTACGAGCACAGAAGAATGTTATGAAATGCCCATCATGTTCTAGCGACATTGCTGAGTTTCTTCAGAATCCACAGGTTAATACAGAAATGGTGAGTTGCATAGAAACTTTACAAAAGAAGGCTGAACTTGAAAAATCTGAAGAGTCAAATGACAAGGAAGATGAAGATGTGCATGATGCGACTGAGGTTTCAGAATCTTCTGATTCTAGTGACAAGGTCCTAGAGGAAATTAAGGACAATGATCTGAATCAGCAACATAAGCGAAGGAAAGAGTGA | 1869 | 0.4831 | MAQLPCDSEGICMRCKEKPPSSQTLSCRTCATPWHLACLPSPPLSVSDSHWDCPDCSDLSDIHPVAPSDNIVSAIHAIQADQSLSEEEKAKRRQELLAGSSDPSKDIATSSDMFDGSFNCSICRQLPDRPVTTPCGHNFCLRCFEKYIAQGRRTCANCRAQIPAKMSSQPRINWQLTVAIRLAKQVKSGSSSGPPKVYHFLRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPADNDPKRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRMGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDEYGDRPRPLPKIEELEGAIDITERKGGPSWDFDEDKGCWLWKKPPPESRKSVDDGTTVRVKRKAKEVSVRETLLKRFGCGICNHVLAFPLTTPCCASNFCKACLEGVFSGKSFIRERGGGGGRSLRAQKNVMKCPSCSSDIAEFLQNPQVNTEMVSCIETLQKKAELEKSEESNDKEDEDVHDATEVSESSDSSDKVLEEIKDNDLNQQHKRRKE* | 623 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu8g01115 | 622 | SMART | G9a_1 | 243 | 400 | IPR003105 | - | |
| Lapu8g01115 | 622 | MobiDBLite | consensus disorder prediction | 82 | 99 | - | - | |
| Lapu8g01115 | 622 | ProSitePatterns | Zinc finger PHD-type signature. | 12 | 56 | IPR019786 | - | |
| Lapu8g01115 | 622 | SUPERFAMILY | FYVE/PHD zinc finger | 5 | 59 | IPR011011 | - | |
| Lapu8g01115 | 622 | SUPERFAMILY | RING/U-box | 479 | 570 | - | - | |
| Lapu8g01115 | 622 | MobiDBLite | consensus disorder prediction | 82 | 108 | - | - | |
| Lapu8g01115 | 622 | Pfam | Zinc finger, C3HC4 type (RING finger) | 119 | 163 | - | - | |
| Lapu8g01115 | 622 | ProSiteProfiles | YDG domain profile. | 248 | 396 | IPR003105 | - | |
| Lapu8g01115 | 622 | Pfam | SAD/SRA domain | 251 | 399 | IPR003105 | - | |
| Lapu8g01115 | 622 | Gene3D | - | 219 | 414 | IPR036987 | - | |
| Lapu8g01115 | 622 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 219 | 414 | - | - | |
| Lapu8g01115 | 622 | ProSiteProfiles | Zinc finger PHD-type profile. | 9 | 59 | IPR019787 | - | |
| Lapu8g01115 | 622 | CDD | RING-HC_ORTHRUS_rpt1 | 117 | 163 | IPR047498 | - | |
| Lapu8g01115 | 622 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 159 | IPR001841 | - | |
| Lapu8g01115 | 622 | MobiDBLite | consensus disorder prediction | 575 | 622 | - | - | |
| Lapu8g01115 | 622 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 2 | 582 | IPR045134 | - | |
| Lapu8g01115 | 622 | SUPERFAMILY | RING/U-box | 113 | 179 | - | - | |
| Lapu8g01115 | 622 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 472 | 620 | IPR013083 | - | |
| Lapu8g01115 | 622 | SMART | ring_2 | 120 | 158 | IPR001841 | - | |
| Lapu8g01115 | 622 | SMART | ring_2 | 486 | 544 | IPR001841 | - | |
| Lapu8g01115 | 622 | SMART | ring_2 | 12 | 56 | IPR001841 | - | |
| Lapu8g01115 | 622 | MobiDBLite | consensus disorder prediction | 587 | 622 | - | - | |
| Lapu8g01115 | 622 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 70 | IPR013083 | - | |
| Lapu8g01115 | 622 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 187 | IPR013083 | - | |
| Lapu8g01115 | 622 | SUPERFAMILY | PUA domain-like | 222 | 416 | IPR015947 | - | |
| Lapu8g01115 | 622 | SMART | PHD_3 | 11 | 57 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu8g01115 | Lapu-Chr8 | 29128314 | 29131842 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu8g01115 | 3 | 573 | C2H2 Transcription Factor Family | AT5G39550 | 61.512 | 0.0 | 737 |