Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01113 ATGGCAACCACTACTGCAGAAAAGGGTAGCCAAAGTGAGTTACGTATGAGTAACACAGACCCCCTTTACTGGGGTGAGGCAGCGGATTCACTTAAGGGTAGCCACTTGGAGGAAGTAAAACGGATGGTGGCGGAGTACCGGAAGGCAGTGATCCATGTTGGTGGAGGGGAGACACTTACTGTATCACGGGTGGCTGCTGTTGCTAACCATTACTTGCAGGCTAAGGTTGACCTCTCAGAGTCTGCAAGGGAAGGCGTTGACGCCAGCTGCAACTGGATCATGGATAACATCGACAAAGGCACTCCCATTTACGGTGTTACCACTGGTTTTGGTGCTTCCTCCAACAGGCAAACTCAAGAAGGCCTTGCTCTTCAAAAAGAAATGGTTAGGTTTTTAAATTGCGCAATATTTGGCTACGAAACAGAGTTATCTCATACACTGCCAAAATCAGCAACCAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCGGGTATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACCACAATGTCACCCCCATCTTGCCATTACGTGGTACAATTACTGCGTCTGGTGATCTAATTCCTCTGTCCTACATTGCTGCATTCCTAACGGGTAGGCGAAACAGCAAAGCTGTTGGACCCTCTGGAGAATCCCTTAATGCTAAGAAAGCTTTCCATTTAGCAGGTCTACATAGTGGGTTCTTTGAGTTGAAGCCCAAGGAAGGACTTGCCCTTGTAAATGGCACAGCCGTTGGGTCTGGCGTAGCTTCTATGGTGCTTTTTGAGGCAAACATATTAGCTTTATTGGCAGAAGTTCTATCAGCAGTTTTTGTTGAAGTCATGCAGGGGAAGCCAGAGTTTACACATCACCTTATACATAAGCTGAAGTACCATCCCGGTCAAATCGAAGCTGCCGCTATTATGGAACACATTCTAGATGGAAGCTCTTATGTTAAGAATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCTAGAAAAGATCGTTATGCTCTGGTAACTTCTCCTCAATGGCTTGGTCCGCAGATTGAAATCATCCGGTTTTCGACCAAATCAATTGAAAGGGAAATAAACTCAGTAAATGATAATCCCTTGATTGATGTCACAAGGAATAAGGCTCTGAATGGTGGCAATTTCCAAGGCACACCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACTGAACTAGACAATGATTTGTATAACAACGGGCTACCATCAAACCTCTCTGTTGGTAGAAATCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGCTCTGAACTTCAATATCTAGCAAATCCGGTAACTAGCCATGTGCAAAGTACTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCGGCTCTGAAAACTGTCGAAGCCATAGAGATATTAAAGCTCATGTCTTCCACTTATCTGGTTGCACTCTGTCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAAAACACTGTCAAGAATACTGTAAGCAGAGTTGCACTGAAAACATTAATTACCGAAGACAAAGAAGAAATTAACCCATTTCGACATTGTGAGAAAGAATTGCTTAAAGTGGTCGATAGAGAATACGTATTTTCATACATTGATGATCCCTCAAATGTTCAGTATCCATTGATGCCAAAACTAAAGCAGGTACTTTATGAGCAAGCACACATCAGTGTCATTAATGACAAGAATGTGAGTTTGTGGATTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTGTCTTGCCAAAGGAAGTTGAAAGTGCACGGGTGGCTTACGAGAATGGCAATCCAGCAATTCCAAACAGAATTAAGGAGTGCAGGTCATATCCACTGTACAAATTTGTGAGGGAGGAGTTAGAGATAAGGTTGCTCACCGGCGAAAAAGCTCTCTCACCAGATGAGGAATTTGAGAAAGTATATACAGCCATGTGCCAAGCAAAGATAATAGACCCAATTCTGGAATGTCTAGGAGATTGGAACGGGGTTCCCATCCCAATATAG 2133 0.4308 MATTTAEKGSQSELRMSNTDPLYWGEAADSLKGSHLEEVKRMVAEYRKAVIHVGGGETLTVSRVAAVANHYLQAKVDLSESAREGVDASCNWIMDNIDKGTPIYGVTTGFGASSNRQTQEGLALQKEMVRFLNCAIFGYETELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAAFLTGRRNSKAVGPSGESLNAKKAFHLAGLHSGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFVEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQPDPLQKPRKDRYALVTSPQWLGPQIEIIRFSTKSIEREINSVNDNPLIDVTRNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELDNDLYNNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLITEDKEEINPFRHCEKELLKVVDREYVFSYIDDPSNVQYPLMPKLKQVLYEQAHISVINDKNVSLWIFEKIGAFEDELKSVLPKEVESARVAYENGNPAIPNRIKECRSYPLYKFVREELEIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLGDWNGVPIPI* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01113 710 CDD PAL-HAL 57 521 IPR001106 -
Lapu8g01113 710 Gene3D - 11 258 IPR024083 -
Lapu8g01113 710 FunFam Phenylalanine ammonia-lyase 11 258 - -
Lapu8g01113 710 Pfam Aromatic amino acid lyase 59 524 IPR001106 -
Lapu8g01113 710 PANTHER HISTIDINE AMMONIA-LYASE 18 710 IPR001106 -
Lapu8g01113 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Lapu8g01113 710 Gene3D Fumarase/aspartase (Central domain) 259 705 - -
Lapu8g01113 710 NCBIfam phenylalanine ammonia-lyase 20 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lapu8g01113 710 SUPERFAMILY L-aspartase-like 20 710 IPR008948 GO:0003824
Lapu8g01113 710 Gene3D - 524 645 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01113 Lapu-Chr8 29108622 29110980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01113 20 710 Monolignol Biosynthesis Gene Families AT2G37040 72.399 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01113 K10775 - gmx:100787872 1259.97