Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01111 ATGGGAGCTGGGCGTGAAGTCTCTATATCACTTGATGGAGTGAGGGACAAGAACCTTATGCAGCTCAAAAAGCTCAATCTCGCTCTTTTCCCCGTTCGTTACAATGACAAATACTATGCCGATGCTCTCGCTTCCGGCGAATTCACCAAACTAGCTTACTATAGTGATATCTGTGTTGGAGCAATTGCGTGTCGGCTGGAGAAGAAGGAAGGAGGGGGCCAAGTTCGGGTTTACATAATGACGTTAGGTGTTTTAGCACCTTATCGTGGACTTGGTATTGGAACAAAACTTTTGAATCATGCTCTTGATCTTTGCTCAAAGCAAAACATTTCTGAGGTGTACTTGCATGTGCAGACAAACAATGAAGATGCCATAAACTTCTATAAGAAATTTGGGTTTGAAATTACAGAAACAATCCAGAACTATTATACAAACATTACACCGCCAGACTGCTATGTTCTCACAAGCCTTCCCGGTGACTATGGATTTGACCCTCTTGGACTTTCAGACCCTGAAGGAACTGGAGGGTTCATTGAGCCCAAATGGCTAGCATATGGTGAGATCATCAATGGTCGTTATGCAATGTTGGGAGCAGTTGGTTGCATAGCACCTGAAATTCTTGGCAAGGCTGGTCTGATCCCTCAGGAGACAGCACTCCCGTGGTTCAGAACCGGTGTGTTCCCACCTGCAGGAACATACAACTACTGGGCTGACTCCTACACACTCTTTGTGTTCGAGTTGGCACTGATGGGATTTGCAGAGCACAGAAGATTCCAAGACTGGGCCAAACCAGGGTCTATGGGGAAACAGTACTTCCTAGGACTGGAGAAGGGTCTTGCAGGTTCTGGTGAGCCAGCATACCCCGGAGGACCTTTCTTTAACCCTCTTGGTTTTGGAAAGGATGAGAAGTCCTTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGTTCAAGCTCTTGTTACAGGTGTCGGGCCATACCAAAACCTCCTAGATCATCTCGCTGACCCCGTCCACAACAACATCTTGACCAGTCTCAAGTTCCACTAA 1083 0.4635 MGAGREVSISLDGVRDKNLMQLKKLNLALFPVRYNDKYYADALASGEFTKLAYYSDICVGAIACRLEKKEGGGQVRVYIMTLGVLAPYRGLGIGTKLLNHALDLCSKQNISEVYLHVQTNNEDAINFYKKFGFEITETIQNYYTNITPPDCYVLTSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGCIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFELALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLAGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01111 360 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 158 IPR000182 GO:0016747
Lapu8g01111 360 FunFam Putative n-alpha-acetyltransferase 50 6 157 - -
Lapu8g01111 360 FunFam Chlorophyll a-b binding protein, chloroplastic 143 359 - -
Lapu8g01111 360 Pfam Chlorophyll A-B binding protein 155 330 IPR022796 -
Lapu8g01111 360 Pfam Acetyltransferase (GNAT) family 50 133 IPR000182 GO:0016747
Lapu8g01111 360 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 17 154 IPR016181 -
Lapu8g01111 360 SUPERFAMILY Chlorophyll a-b binding protein 151 356 - -
Lapu8g01111 360 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 152 355 IPR001344 GO:0009765|GO:0016020
Lapu8g01111 360 Gene3D - 5 151 - -
Lapu8g01111 360 CDD NAT_SF 51 116 - -
Lapu8g01111 360 Gene3D Chlorophyll a/b binding protein domain 152 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01111 Lapu-Chr8 29096584 29103627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01111 151 360 Chloroplast and Mitochondria Gene Families AT1G61520 88.571 6.91e-138 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lapu8g01111 Chloroa_b-bind 2.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01111 K08909 - gmx:100784090 407.912