Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01109 ATGGAGATGCAACAACTCCTCAGCATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCTTTGGCCGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATCCTCACTCACAAATCCAACTCTTCCCAATCCCCCCCACCTCCACAATCGCAGTCACAAGAGGAAGAAGAAGATGATGAAGAACCTTCCAAACGTCCCAGGCCTTCCACTCATTCTGCACAGCATCCGCATCCGCAGCCACAACAGCAAAACTGGCCCACTTTCTTCTTCAAGACCGCAGAGAAGAAACACGCCAACACCCACATTCACCAACCCTTGTATGAGCGCTTGCGTCCCAGAACCCTGGACGACGTCGTAGGTCAGGACCATCTCCTGGCCACCAACTCCCTTCTTCGCTCCTCAATCCAACGCAACCGCCTCCCCTCCATCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCCAAAGCCATCGTTAAATCCTCAACCTCAAGCTCTGCACGTTACCGGTTTGTCTCCTTATCTGCCGTTACTAGCGGCGTTAAAGACGTCAGGGACGCTGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAGACCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAACAGGACTCTTTCTTACCCGTGATTGAAGATGGCAGCATCGTATTCGTTGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAATCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAATGACACTGACAAAGGCTTGATGAAAAGCGCGGGGCTTCAAGTTGATGTTAAAGAGGATGTTGTTGATTTTATAAGCAACAATTGTGATGGGGATGCTCGGGTGGCCCTCAATGCCCTGGAGATTGCAGCTGTTACTGCAGCTGCGAGGGCACAACATGGTAAACAAAAAGAACAAGAAGGGATTGAAGATCTTCACACCAATGAGGAATGCAAGGTTGTTGCTGCTGCTGCTGTTGTTAGTGTTGATGACGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAATCTAATCAGCGCGTTGCACAAGTCTATGAGGGGAAGCGATGCGAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGTGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCAAGTGAGGATGTTGGTTTAGCTGACCCATTAGCTCTTAATCAGGCTGTTTCTTGCTACCAAGCTTGCCACTTCCTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCGGTTTATCGAGCTATAGGAGCCGCTCAGAAGGCAGTGAGGGAATCAGCTGGACAGAATGAGGGGGTGCCTCTCCATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCAAAGGGATACATCTACCCTCCGGATAACCCTTCCTCCACACAAACTTACTTGCCACCATCACTTCAAGGCCACAAGTTCTTTGATTGGCCTGACAGGATTCCTTATGATGGATAA 1647 0.5015 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNSSQSPPPPQSQSQEEEEDDEEPSKRPRPSTHSAQHPHPQPQQQNWPTFFFKTAEKKHANTHIHQPLYERLRPRTLDDVVGQDHLLATNSLLRSSIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTSSSARYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNDTDKGLMKSAGLQVDVKEDVVDFISNNCDGDARVALNALEIAAVTAAARAQHGKQKEQEGIEDLHTNEECKVVAAAAVVSVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRAIGAAQKAVRESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGHKFFDWPDRIPYDG* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01109 548 Pfam AAA C-terminal domain 289 390 IPR032423 -
Lapu8g01109 548 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 544 548 - -
Lapu8g01109 548 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 148 167 - -
Lapu8g01109 548 FunFam Replication-associated recombination protein A 96 261 - -
Lapu8g01109 548 Gene3D - 365 468 - -
Lapu8g01109 548 MobiDBLite consensus disorder prediction 33 52 - -
Lapu8g01109 548 CDD AAA 120 255 - -
Lapu8g01109 548 Pfam ATPase family associated with various cellular activities (AAA) 144 256 IPR003959 GO:0005524|GO:0016887
Lapu8g01109 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 327 IPR027417 -
Lapu8g01109 548 SMART AAA_5 140 262 IPR003593 GO:0016887
Lapu8g01109 548 CDD HLD_clamp_RarA 262 317 - -
Lapu8g01109 548 FunFam Putative AAA family ATPase 365 468 - -
Lapu8g01109 548 SUPERFAMILY post-AAA+ oligomerization domain-like 375 542 IPR008921 GO:0003677|GO:0006260
Lapu8g01109 548 Pfam MgsA AAA+ ATPase C terminal 391 540 IPR021886 -
Lapu8g01109 548 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 543 - -
Lapu8g01109 548 Gene3D - 2 65 - -
Lapu8g01109 548 Gene3D - 93 260 IPR027417 -
Lapu8g01109 548 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Lapu8g01109 548 MobiDBLite consensus disorder prediction 32 85 - -
Lapu8g01109 548 Gene3D - 262 340 - -
Lapu8g01109 548 Gene3D - 469 544 - -
Lapu8g01109 548 Pfam UBA/TS-N domain 4 35 IPR015940 -
Lapu8g01109 548 FunFam AAA-type ATPase family protein 262 335 - -
Lapu8g01109 548 SUPERFAMILY UBA-like 3 50 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01109 Lapu-Chr8 29089191 29090892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01109 106 316 Core DNA Replication Machinery Family AT1G77470 28.372 1.11e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01109 K07478 - gmx:100799257 885.945