Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01103 ATGGAAAAGAGAGGTGACGGTGCTGATGCTGAGCTTCAATTTCACGCTGATTTTGTGCCAGATCCTGCCCAGAGATGTACTGGAAATGAAAAGGGAGACAAGGCCTCCAAGATTCCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCACTAGATATTGCACTATCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCAAGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCATCAATGAGAACTTTACTTCCTCAGAGGAGCTTGAAGACAAATACTTGTTCCCAGGATATTGAAAGGACAGGTCTCATAGTTCCTAAAACTCCCTCATCAGATGCTCCTTTGGATAAACCTTCCACTTCAATTCACCTGTCTCTCAGAAATAAGGTCATCTCCCCATCAACAAAAGGTGCACACTCATTACCAGTTACTCCATTTGCAACTTCAGCTCCAGAGAATGCACATGGAAGACATTTTGGGTGTGATTCTGGTTCAAGTAAAATGGGTGTTCATCGGCATATGACTCGATCATTTTCAGTCCCAGCTGATGGCAAAGCCACTAGTTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCCAAACCACATCTTCAAACTGTTCGTAGGAACTCAACTGATGGTGCTTTGGTTTCAGAGATTGCCATTGAAGATGCCACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAAGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTACAGTCGTCAAACTACTGTTAGGCAGCCATCAAATGTGTCACACCATACAGAAGTAGCTTATTACAGGACCTGGCAGGATGTACCAGTACTTATGTTGGTCAGCATGCTTGCTTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACCATTCTCAATCTAAATGCAATTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGGATTGCAATAACTGTGAACTCTCTGGTTATGGAATTTATTGAATGGAAAAATAGTAGGAGGGTTCAATCCTCCATCGAGAATGTTAACATGACAGTGCAGCAGCGTCGAGAGCATGTACAGCAACAGGGACAGGAAGATCAAGGAGAACATCAACGACAAAGACAATGA 1479 0.4334 MEKRGDGADAELQFHADFVPDPAQRCTGNEKGDKASKIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTLLPQRSLKTNTCSQDIERTGLIVPKTPSSDAPLDKPSTSIHLSLRNKVISPSTKGAHSLPVTPFATSAPENAHGRHFGCDSGSSKMGVHRHMTRSFSVPADGKATSLRVTDSRGLIRVISAKPHLQTVRRNSTDGALVSEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYSRQTTVRQPSNVSHHTEVAYYRTWQDVPVLMLVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAILSILLSSFTGFGIAITVNSLVMEFIEWKNSRRVQSSIENVNMTVQQRREHVQQQGQEDQGEHQRQRQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01103 492 SUPERFAMILY RING/U-box 250 305 - -
Lapu8g01103 492 MobiDBLite consensus disorder prediction 1 47 - -
Lapu8g01103 492 MobiDBLite consensus disorder prediction 476 492 - -
Lapu8g01103 492 CDD RING_CH-C4HC3_MARCH 254 302 - -
Lapu8g01103 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 309 IPR013083 -
Lapu8g01103 492 MobiDBLite consensus disorder prediction 148 167 - -
Lapu8g01103 492 PANTHER OS02G0165000 PROTEIN 34 464 - -
Lapu8g01103 492 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Lapu8g01103 492 MobiDBLite consensus disorder prediction 65 95 - -
Lapu8g01103 492 SMART ringv_2 253 302 IPR011016 GO:0008270
Lapu8g01103 492 MobiDBLite consensus disorder prediction 473 492 - -
Lapu8g01103 492 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Lapu8g01103 492 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01103 Lapu-Chr8 29059951 29066692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01103 237 308 C3H Transcription Factor Family AT2G37950 45.205 3.24e-13 67.0