Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01078 ATGGGAAACTGCTGGGGTTCTCAACCTCACAACAACGTAACCCCAACAACCACCGGTAACCTTAGTACAGTCACACCGGGGACATCTCAGACCATCAGCACCTCCACCACCACCACCGGCAGCTTTACTACTACCACAACCACAACTACTACTTCTGGAAGTGGGAACAGCTCCATAAGAAGCAACTTATCGGTGTCAGGCGGTGATCAACCTTATCCAAATGGGCAGATCTTACCCGCCTCTAATTTGAGGATTTTCACCTTTGCCGACTTGAAGGCTGCAACTAGGAATTTCAGACCTGATACAGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCACTTCAAAGAGTGGTAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCGGTCCGAAGTGAACTTTCTGGGACGCCTTTCCCATCCTAATCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTTCTTCTCGTGTATGAATTCATGCAAAAGGGAAGTTTGGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCTGGTCGTGGCCTTGCATTCTTGCATACATCCGAGAAAGTAATATACAGAGACTTCAAGGCCTCAAATATATTGCTTGATGGGTCCTATAACGCAAAGATATCAGATTTTGGCTTGGCAAAATTGGGTCCTTCAGCTAGTCAATCTCATGTGACAACAAGGGTCATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTCAAAAGTGATGTATATGGGTTTGGAGTTGTTTTGGTGGAAATATTAACAGGGCTACGAGCTCTTGATTCGAACCGTCCAAGTGGGCAACATAATCTAACAGAGTGGGTGAAACCATACTTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCAAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTGAAATGTCTTGCAACTGAGCCCAAACAGCGACCGTCAATGAAGGAAGTTTTGGAGAGTTTGGAGCGAATTCAAGCTGCCAACGACAAACCTGTGGAGCCTAAATTACGATCTACTCATACTCGTCAAGCCCACCAGGCTGTGCACCATCGTTCTCCACTTCGGGACGGTAGTTACTAG 1248 0.4615 MGNCWGSQPHNNVTPTTTGNLSTVTPGTSQTISTSTTTTGSFTTTTTTTTTSGSGNSSIRSNLSVSGGDQPYPNGQILPASNLRIFTFADLKAATRNFRPDTVLGEGGFGKVFKGWLEEKGTSKSGSGTVIAVKKLNSESLQGIEEWRSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAGRGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALKCLATEPKQRPSMKEVLESLERIQAANDKPVEPKLRSTHTRQAHQAVHHRSPLRDGSY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01078 415 Pfam Protein tyrosine and serine/threonine kinase 102 377 IPR001245 GO:0004672|GO:0006468
Lapu8g01078 415 MobiDBLite consensus disorder prediction 381 396 - -
Lapu8g01078 415 MobiDBLite consensus disorder prediction 1 73 - -
Lapu8g01078 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Lapu8g01078 415 Gene3D Phosphorylase Kinase; domain 1 82 181 - -
Lapu8g01078 415 Gene3D Transferase(Phosphotransferase) domain 1 182 404 - -
Lapu8g01078 415 FunFam Serine/threonine-protein kinase PBS1 182 396 - -
Lapu8g01078 415 FunFam Serine/threonine-protein kinase BIK1 66 181 - -
Lapu8g01078 415 CDD STKc_IRAK 104 380 - -
Lapu8g01078 415 ProSiteProfiles Protein kinase domain profile. 98 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01078 415 PANTHER OS01G0588500 PROTEIN-RELATED 46 381 - -
Lapu8g01078 415 MobiDBLite consensus disorder prediction 381 415 - -
Lapu8g01078 415 SUPERFAMILY Protein kinase-like (PK-like) 77 379 IPR011009 -
Lapu8g01078 415 ProSitePatterns Protein kinases ATP-binding region signature. 104 135 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01078 Lapu-Chr8 28822939 28826312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01078 67 381 Receptor kinase-like Gene Family AT4G02010 48.903 4.85e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu8g01078 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01078 - - vun:114194495 722.235