Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01066 ATGCATATGCATAGATTCAGAGCGAGGGGTTTTCTGCGCTCAATCTCTCTTTGTAAATCTAAGTGGCATCAACACCATGGAGCTCAATTTCACTTCTCCCAAAATCTCACCTCCTCAACAGAACCGTCTATGCAGATGCAAGTTGTTAAGGCACTCTGCTCGGGTGAGAGAAAAAAGGCTTCAGACTTACTTTTGGATTTTGGTTCCAGTACCCACTCGTTAACAGCTGACCATTTTCTTCATATTTTTAAGTACTGTGCACGCTCTCCTGATCCATTGTTTGTAATGGAGATTTGGAGATTCATGGAGTTAAAAGGTGTTAGCATGAACTATATATGCTCATCTCTTATGATAGAGGCCCTTTGTAAAGGGGGTTACTTGGAAGAGGCCTTTGATATCATGGATTTTCTTGGAGGAAGTCAATGTCTCTATCCAGTTCTTCCACTTTACAATAGTCTCTTAGGATCCTGCACGAAAATGCAGAGTCTAATTCTAGCAAGCAAATGTTTGGAATTGATGGAAAAGAAGATGGTAGGAAAGAGTGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTCTGCAGAAAAACTTGCCTGCAGCTCATCTTGTTTGGAAGGAGTATGTGAAAAACTATGGCATGAGTATCATTGCTCTGCGGAGATTCATTTGGGCATTTACAAGGTTAGGAGATTTAGAATCTGCATATAAAACACTACAACAAATGGTGTCATTAGCTGTCAGGGGAAATATTTCTATCGCTAGAACAGTTTATGGGAAGTTGTATTCTACTAGAATGGACATTCCTATGCCTTCAAATAAGGGGCTAGGCTTAACAATATCAGACTTGAAGAACAAAAAATTGGAGTGTTGTATGAGTGCTAAATTAGATGGGCTGAATGGAGAAGAACACTCACTACTTATGAAGGTGTTGAGGTGGTCCTTTAGTGACATAATACATGGGTGTGCAACCCAAAAGAATTATATGCTTGCAAGGCAGCTTATATTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGCATTATTAAAGCAGTTGTTTCTCATGGAAGTTTTGAGGATGCCATAGAAGTGTTGAAAAAAATGCAGCAGAAGAATTTGCTGCCGAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGCAAAGCACTACAGTTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCGCATCCTTATAATGCTTTGCTAGAATCATGTGATGCATTGAATCAACCTGAACGTGCTGTGCAAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTAATATCAGGACTTTTGAGCTTCTATTTTCGTTATTTGGGGTTGTAAATGCCCCTTATGAAGACAGTAATATACTGTCACAGGTGGATACTGCTAAAAGAATAAATGCTATAGAAAAGGATATGGCCACAAATGGCATTCAGCACAGTCATCTTTCAATAAAAAACTTGTTGAGAGCTCTTGGAGAAGAAGTGATGATAAGAGAGCTGATCCATTATTTACACGTGGCAGAGAATCTTTTCATTTATAGAAATCCTTCATTGGGAACACAGATGTACAACACAGTGTTACATTATCTTGTCGAAGCCAAAGAAAGTGACATGGCAATTTCAATTTTCAAGAAGATGAAGTTATGGGGTTGCAACCCTGACTCTGAAACATACAATATCATGATTGACTGTTGTACCATCCTAAAAAGCTATAGATCTGCTTGTTTGCTGATTTCAATGATGATACGGAAAGGGTTTTGTCCAGTGATATGTACATATACCGCTATCATAAAGATTTTGTTGGAAGATGAGAACTTTGATGAAGCCCTGAATCTTTTGAAACAAGTCATATTGGATGGCATCCAACCTGATATACTGCTGTTCAATACGGTTCTTAAACAAGCATGTTACAAGGGAAGGATTGATATAATTGAGTTAATTGTGGAGCATATGCACCGAGAGAAAGTTCTCCCCGATCCAAGAACATGCGGCTATGTGTTCTCTGCATATGTAAATTCTGGTTTTCACAATACAGCAATTGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCCAAAGATGGCAACATACTTGGAGAGAAGAAAAATTTTGTGAATGAATTCATCCTGTCTGAAGATTTGGCTGCTGAGTCCCAGATACTTCAGTTATTTGAAGATTCTGAAGATGAACTTGCAGTTGGTTTATTGAATTTAAGGTGGTGTGCCATAGCTGGATTCCCAATCTGCGAGTCAGCTGATCAAAGTCTGTGGGCTAGAAGACTGGAAGGTAAACCGTTGTGA 2349 0.3883 MHMHRFRARGFLRSISLCKSKWHQHHGAQFHFSQNLTSSTEPSMQMQVVKALCSGERKKASDLLLDFGSSTHSLTADHFLHIFKYCARSPDPLFVMEIWRFMELKGVSMNYICSSLMIEALCKGGYLEEAFDIMDFLGGSQCLYPVLPLYNSLLGSCTKMQSLILASKCLELMEKKMVGKSEVTYTELLKLAVLQKNLPAAHLVWKEYVKNYGMSIIALRRFIWAFTRLGDLESAYKTLQQMVSLAVRGNISIARTVYGKLYSTRMDIPMPSNKGLGLTISDLKNKKLECCMSAKLDGLNGEEHSLLMKVLRWSFSDIIHGCATQKNYMLARQLILQMENLGLQPSCHTYNGIIKAVVSHGSFEDAIEVLKKMQQKNLLPNDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNALLESCDALNQPERAVQVFAKMKQKKVLPNIRTFELLFSLFGVVNAPYEDSNILSQVDTAKRINAIEKDMATNGIQHSHLSIKNLLRALGEEVMIRELIHYLHVAENLFIYRNPSLGTQMYNTVLHYLVEAKESDMAISIFKKMKLWGCNPDSETYNIMIDCCTILKSYRSACLLISMMIRKGFCPVICTYTAIIKILLEDENFDEALNLLKQVILDGIQPDILLFNTVLKQACYKGRIDIIELIVEHMHREKVLPDPRTCGYVFSAYVNSGFHNTAIEALQVLSLRMMSKDGNILGEKKNFVNEFILSEDLAAESQILQLFEDSEDELAVGLLNLRWCAIAGFPICESADQSLWARRLEGKPL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01066 782 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 778 - -
Lapu8g01066 782 Gene3D Tetratricopeptide repeat domain 530 632 IPR011990 GO:0005515
Lapu8g01066 782 Gene3D Tetratricopeptide repeat domain 308 414 IPR011990 GO:0005515
Lapu8g01066 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Lapu8g01066 782 Pfam Pentatricopeptide repeat domain 596 649 IPR002885 -
Lapu8g01066 782 Pfam Pentatricopeptide repeat domain 337 381 IPR002885 -
Lapu8g01066 782 Pfam Pentatricopeptide repeat domain 417 460 IPR002885 -
Lapu8g01066 782 Gene3D Tetratricopeptide repeat domain 633 703 IPR011990 GO:0005515
Lapu8g01066 782 Gene3D Tetratricopeptide repeat domain 44 270 IPR011990 GO:0005515
Lapu8g01066 782 Gene3D Tetratricopeptide repeat domain 415 529 IPR011990 GO:0005515
Lapu8g01066 782 NCBIfam pentatricopeptide repeat 607 641 IPR002885 -
Lapu8g01066 782 NCBIfam pentatricopeptide repeat 538 571 IPR002885 -
Lapu8g01066 782 NCBIfam pentatricopeptide repeat 348 381 IPR002885 -
Lapu8g01066 782 NCBIfam pentatricopeptide repeat 573 604 IPR002885 -
Lapu8g01066 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Lapu8g01066 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Lapu8g01066 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lapu8g01066 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Lapu8g01066 782 Pfam PPR repeat 115 135 IPR002885 -
Lapu8g01066 782 Pfam PPR repeat family 538 581 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01066 Lapu-Chr8 28634295 28645424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01066 314 744 Glycosyltransferase AT1G05670 20.127 1.54e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01066 - - vun:114194590 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g01066 8 28634295 28645424 Lapu8g01066 8 28634295 28645424 ECH