Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01064 ATGGAGGAGCAAATAGACCCAAGGAGTGGCTTCTGCCCCTCCAACTCAGTCTTCTACAGCAAGCGGAACCCACTCCCACTGCCTCCCAACAACGCCCTCGACGTCACCACCTTCATCTCCTCCAGAGCCCACCGTGGAACCGTCGCCTTCATCGACGCCGCCACAGGCCGCCAGCTCAGCTACACCCAGCTGTGGCGAGCGGTGGAGGGCGTGGCGGGCTCTCTCTGGGACATGGGGATCCGAAAGGGCAACGTGGTCCTGCTCCTCTCTCCCAACTCCATCGACTTCCCGGTGGTGTGCCTGGCCATCATGTCCCTCGGCGCCGTCATCACCACCACCAACCCCCTCAACACCACGCGGGAAATCGCCAAGCAGATCGCCGACTCCAAGCCCCTCCTCGCCTTCACCACCCCTCTCTTGCTCCCCAAACTCACCCAGGCAGCACCATCCTTACCAATCATTCTCATGGACACCACCACTCATTCACCCTTTCCCAACGCAAAAATTGTTGCCACGCTCGACGACATGGCCAAGAAGGAACCCGTGGCTCATCGCGTGAGGGAGCGCGTGGAGCAGGACGACACGGCCACGCTGCTCTACTCCTCCGGCACCACGGGACCCAGCAAGGGCGTGCTTTCCTCCCACCGGAACCTCATAGCCATGGTCCAAATCGTTCTCGGTCGCTTCCACGTCGAAGACAACGAAACCTTCATCTGCACGGTCCCCATGTTTCACATATACGGTCTCGTCGCCTTCGCCACCGGCCTCCTCGCCTCCGGCTCCACCATCGTCGTCCTTTCCAAGTTCGAGATGCACGACATGCTCTCCGCCATCGAGAGGTTCCGCGCCACCTACCTCCCCCTGGTTCCACCCATTCTCGTGGCCATGCTCAACAACGCAGACGCCATCAAGGGAAAGTACGATATCAGATCCCTGCATTCTGTCCTCTCCGGTGGGGCTCCCCTGAGTAAGGAGGTCATAGAAGGGTTTGTGGACAAGTACCCGAACGTCACCATCCTTCAGGGTTATGGTTTGACGGAATCCACCGGCGTTGGGGCCTCCACCGACTCCCTGCAGGAGAGTCGTAGGTACGGCACTGCGGGCCTCTTGTCGCCGGCCACCCAAGCCATGATCGTGGACCCTGACTCCGGCCAATCGCTTCCGGTTAACCGCACCGGAGAGCTCTGGCTCAGGGGTCCCACCATCATGAAAGGTTATTTCAGTAATGAAGAGGCCACCGCATCAACACTTGATTCAAAAGGATGGTTAAGAACAGGAGATGTCTGTTACATTGACAATGATGGATTCATATTTATTGTGGATCGATTAAAAGAGCTTATCAAATACAAGGGATATCAGGTGCCACCAGCAGAACTGGAGGCCTTGTTACTGACTCATCCCGCTGTTTTAGATGCTGCTGTTATCCCGTATCCAGATAAGGAGGCTGGGCAGTTTCCAATGGCATACGTGGTGAGGAAGGATGGAAGTAGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGCTGGACAGGTGGCTCCGTACAAGCGGATTCGAAAAGTAGCGTTTATCTCCTCCATACCTAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTCGCAACTTCTAAACTCTGA 1644 0.5614 MEEQIDPRSGFCPSNSVFYSKRNPLPLPPNNALDVTTFISSRAHRGTVAFIDAATGRQLSYTQLWRAVEGVAGSLWDMGIRKGNVVLLLSPNSIDFPVVCLAIMSLGAVITTTNPLNTTREIAKQIADSKPLLAFTTPLLLPKLTQAAPSLPIILMDTTTHSPFPNAKIVATLDDMAKKEPVAHRVRERVEQDDTATLLYSSGTTGPSKGVLSSHRNLIAMVQIVLGRFHVEDNETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSAIERFRATYLPLVPPILVAMLNNADAIKGKYDIRSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGVGASTDSLQESRRYGTAGLLSPATQAMIVDPDSGQSLPVNRTGELWLRGPTIMKGYFSNEEATASTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAVLDAAVIPYPDKEAGQFPMAYVVRKDGSSLSESQVMDFVAGQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01064 547 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Lapu8g01064 547 Gene3D - 445 546 IPR045851 -
Lapu8g01064 547 Gene3D - 16 444 IPR042099 -
Lapu8g01064 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 19 444 - -
Lapu8g01064 547 SUPERFAMILY Acetyl-CoA synthetase-like 41 545 - -
Lapu8g01064 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Lapu8g01064 547 CDD 4CL 27 539 - -
Lapu8g01064 547 Pfam AMP-binding enzyme 42 449 IPR000873 -
Lapu8g01064 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Lapu8g01064 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01064 Lapu-Chr8 28624682 28627765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01064 5 547 Monolignol Biosynthesis Gene Families AT1G20500 65.146 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01064 K10526 - gmx:100811344 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g01064 8 28624682 28627765 Lapu8g01064 8 28624682 28627765 ECH