LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01059	ATGGGCTTCTTGAAGGAACAAACCAATCAACAAACTGATCTAGCTGCAATTTTACGTGACGGAAAAGACATACTTCTTCAGGCATTCAACTGGGAGTCTCACAAACACAACTGGTGGAATAATTTGGAAACCAAAATTCCTGACATCGCTAAAGCTGGGTTTACGTCAGTCTGGTTGCCACCACCAACTCACTCATTTTCACCTGAAGGTTACACTCCCCAGAACCTCTACTCTCTTAACAGCAAATATGGTTCTGAGCGCCAATTAAGAGCTTTACTTCACAAGATGAAGCAATATAATGTCAGAGCAATGGCTGACATAGTTATCAATCATCGCACTGGAACCACTAAAGGACGTGGAGGAATGTATAATCGTTTTGATGGAATTCCATTAGGATGGGATGAACGTGCAGTCACATCATGTACCGGAGGACTGGGTAATCGAAGCACAGGGGCGGTTTTTGATGGATTTCCAAATATTGACCACACTCAAGATTTTGTGAGAAAGGATATCATAGGTTGGCTTCGTTGGTTGCGTCATGAAGTGGGCTTTCAAGATTTTCGATTCGATTTTGCAAAAGGGTTTTCAGCAAAATATGTGAAAGAATATATTGAAGGAGCAAAGCCTTTGTTTTCTGTAGGAGAGTATTGGGACACTTGCAACTATAAGGGCTGTTCTTTGGACTATAATCAAGATGGTCATAGGCAACGTATAATTAATTGGATAGATGGTACTGGACAACTTTCAAGTGCATTTGACTTTACAACAAAAGGAATTCTTCAGGAAGCTGTCAAAGGAGAGTTTTGGCGCCTGCGTGATGCTCAAGGCAAGCCCCCAGGTGTGATAGGGTGGTGGCCATCAAGATCTGTCACATTTATTGATAATCATGATACAGGCTCAACCCAGGGTCATTGGCCATTCCCGAAAGACCATATCATGGAGGGGTATGCATATATATTAACTCATCCGGGGATACCAACCGTTTTCTATGACCACTTCTATGACTGGGGGAATTCAATTCGAGATCAGATTGTGAAACTGATTGACGTTCGAAAACGCCATGGTATTCAAAGTAGAACACCTGTGAGGATTGTGGAGGCTAAACACGATCTTTACTCTGCAATAATTGGAGAGAAAATATGCATGAAAATTGGAAATGGTTCATGGTGTCCCTCTGGAAGGGAATGGACGCTGTCAACTTCGGGCCACAATTATGCAGTGTGGCATAAGCATTAA	1236	0.4231	MGFLKEQTNQQTDLAAILRDGKDILLQAFNWESHKHNWWNNLETKIPDIAKAGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSERQLRALLHKMKQYNVRAMADIVINHRTGTTKGRGGMYNRFDGIPLGWDERAVTSCTGGLGNRSTGAVFDGFPNIDHTQDFVRKDIIGWLRWLRHEVGFQDFRFDFAKGFSAKYVKEYIEGAKPLFSVGEYWDTCNYKGCSLDYNQDGHRQRIINWIDGTGQLSSAFDFTTKGILQEAVKGEFWRLRDAQGKPPGVIGWWPSRSVTFIDNHDTGSTQGHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIDVRKRHGIQSRTPVRIVEAKHDLYSAIIGEKICMKIGNGSWCPSGREWTLSTSGHNYAVWHKH*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01059	411	Gene3D	Glycosidases	23	355	-	-
	Lapu8g01059	411	CDD	AmyAc_arch_bac_plant_AmyA	24	362	-	-
	Lapu8g01059	411	SUPERFAMILY	(Trans)glycosidases	31	341	IPR017853	-
	Lapu8g01059	411	Pfam	Alpha-amylase C-terminal beta-sheet domain	353	409	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Lapu8g01059	411	PIRSF	Alpha-amylase_plant	3	411	IPR013775	GO:0004556\|GO:0005509\|GO:0005975
	Lapu8g01059	411	SMART	aamy	23	363	IPR006047	GO:0005975
	Lapu8g01059	411	PANTHER	ALPHA-AMYLASE	25	409	-	-
	Lapu8g01059	411	SMART	alpha-amyl_c2	352	410	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Lapu8g01059	411	Pfam	Alpha amylase, catalytic domain	44	113	IPR006047	GO:0005975
	Lapu8g01059	411	SUPERFAMILY	Glycosyl hydrolase domain	358	410	-	-
	Lapu8g01059	411	Gene3D	-	356	410	IPR013780	-
	Lapu8g01059	411	PRINTS	Alpha-amylase signature	184	195	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Lapu8g01059	411	PRINTS	Alpha-amylase signature	287	299	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Lapu8g01059	411	PRINTS	Alpha-amylase signature	100	111	IPR006046	GO:0004556\|GO:0005975\|GO:0043169

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01059	Lapu-Chr8	28567221	28571327	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01059	6	410	Glycoside Hydrolase	AT1G76130	75.802	0.0	678

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01059	K01176		-	gmx:100813490	800.816

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu8g01059	8	28567221	28571327	Lapu8g01059	8	28567221	28571327	ECH