Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01052 ATGGGGTTGGGGTTGTTTAAGGCGTTGTATTGCTGCAGCAAGGCCCGTGAAATTGAAATCGAGGATTCATGGGAGTCCTCGTCGGAGCGTAGCACGAAAGAAGATAGTAGAAAAAGGAAAGCAGATGCAGGTGTTGGTGAGAAAAACAGGAGCAGACCACAAACAGGAGCAATTCTGGGAAAACCGTACGTGAACATAGAGCAAATGTACGAGATGAAGAAAGAGCTAGGAAGCGGACAATGGGGTGTGACTTATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCATGCAAGACGATAGCGAGGTCGAAGCTGGTGAGTGAGCAGGAGATTGAGGATGTGAGAAGAGAGGTTATGATTCTGCAGCATCTGTCGGGGCAACCCAACATCGTGGAGTTCAGAGGGGCTTACGAGGACAGACACCACGTGCACCTGGTCATGGAGCTGTGCAGTGGCGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCCGAGCGTGAGGCGGCGACGGTGATGAGGCAGATTGTGAACGTGGTTCACGTCTGCCATTTCATGGGCGTCATGCATCGAGACCTCAAGCCTGAGAATTTCTTGTTAGCCACCAACACAGACAATGCTCCCGTCAAAGCCACTGATTTTGGACTCTCCATTTTCATCGAGGAAGATAAAGTGTATAAGGAGCTTGTCGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAACAAGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCGGGAATAATTTTATACATTCTTCTAAGTGGAGTGCCACCATTTTGGGCTGAAACCGAGAGGGGCATATTTGATACAATTTTGGAAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAGCTGCTGCTAAAGATTTGATCAGGAAAATGTTGACTTATGATCCTAAGAAACGCCTTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAGGGTGGTGAAGCATCTGATAAGCCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTAGCTTTAAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATTACATACGAGGAACTAAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAAAATGAAATAAAGCAGCTAATGGAAGCTGCTGATGTTGACAAGAATGGAACTATTGACTATCAAGAGTTCATCACTGCCACTATAAACCGGCATAAACTGGAGAAGGAAGAGCATTTGTATAAGGCTTTTCAATACTTTGACAAGGATAACAGTGGATATATAACAAGAGAAGAGCTTAGACAAGCATTGACTGAATATCATATGGGAGATGAAGCAGCTATAGACGAAGTCATCGATGACGTGGATACTGATAACGATGGGAAAATAAATTACCAGGAGTTTGTGGCAATGATGAGAAAGGGTGTCCTGGATATTGATGAGAAGGAGAAACCGCGATAG 1566 0.4521 MGLGLFKALYCCSKAREIEIEDSWESSSERSTKEDSRKRKADAGVGEKNRSRPQTGAILGKPYVNIEQMYEMKKELGSGQWGVTYLCVEKTTQREYACKTIARSKLVSEQEIEDVRREVMILQHLSGQPNIVEFRGAYEDRHHVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQIVNVVHVCHFMGVMHRDLKPENFLLATNTDNAPVKATDFGLSIFIEEDKVYKELVGSAYYVAPEVLNKSYGKEIDVWSAGIILYILLSGVPPFWAETERGIFDTILEGKLDLESAPWPSISAAAKDLIRKMLTYDPKKRLTAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSENEIKQLMEAADVDKNGTIDYQEFITATINRHKLEKEEHLYKAFQYFDKDNSGYITREELRQALTEYHMGDEAAIDEVIDDVDTDNDGKINYQEFVAMMRKGVLDIDEKEKPR* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01052 521 MobiDBLite consensus disorder prediction 21 47 - -
Lapu8g01052 521 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Lapu8g01052 521 FunFam Calcium-dependent protein kinase 1 336 511 - -
Lapu8g01052 521 CDD STKc_CAMK 70 327 - -
Lapu8g01052 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 65 503 - -
Lapu8g01052 521 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Lapu8g01052 521 Pfam EF-hand domain pair 445 508 IPR002048 GO:0005509
Lapu8g01052 521 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Lapu8g01052 521 SMART efh_1 447 475 IPR002048 GO:0005509
Lapu8g01052 521 SMART efh_1 375 403 IPR002048 GO:0005509
Lapu8g01052 521 SMART efh_1 482 510 IPR002048 GO:0005509
Lapu8g01052 521 SMART efh_1 411 439 IPR002048 GO:0005509
Lapu8g01052 521 SUPERFAMILY Protein kinase-like (PK-like) 70 335 IPR011009 -
Lapu8g01052 521 Gene3D - 336 510 - -
Lapu8g01052 521 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01052 521 SUPERFAMILY EF-hand 367 508 IPR011992 -
Lapu8g01052 521 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Lapu8g01052 521 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lapu8g01052 521 FunFam calcium-dependent protein kinase 1 156 335 - -
Lapu8g01052 521 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01052 521 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Lapu8g01052 521 Gene3D Phosphorylase Kinase; domain 1 72 155 - -
Lapu8g01052 521 MobiDBLite consensus disorder prediction 21 56 - -
Lapu8g01052 521 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Lapu8g01052 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Lapu8g01052 521 FunFam Calcium-dependent protein kinase 1 72 155 - -
Lapu8g01052 521 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01052 521 ProSiteProfiles EF-hand calcium-binding domain profile. 479 513 IPR002048 GO:0005509
Lapu8g01052 521 Gene3D Transferase(Phosphotransferase) domain 1 156 335 - -
Lapu8g01052 521 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Lapu8g01052 521 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01052 Lapu-Chr8 28536442 28541466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01052 57 510 EF-hand Containing Proteins AT4G04720 72.026 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu8g01052 Pkinase 3.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01052 K13412 - gmx:100816157 859.751