Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01050 ATGCTGGATTCAGTGCTTCTGGCGCTGTTCTTGCCCTGCCTTGGCATGAGCGCCGTTTTCATCGTCTACATGTGCCTTTTATGGTACGCCACCACCCACCACACCGATCCACAGCCGCCGGATAAGCCAATCTCCCACGACGGCCTCTCCCCTTCACAGCTCCAAAAGCTCCCCTCCATCACCGGAAAAGACATTCTCATGGGTTCCGAATGCGCTGTCTGCCTCGAGGAAATCGCCACCGACCAACCCGCTCGACTGGTTCCCGGTTGCAACCACACCTTCCATTTGGAATGTGCAGACACCTGGCTCTCCAAACACCCTCTCTGTCCTCTCTGCAGAGCCAAACTCGACCCCACGCTTTTCTCTTCCTCAGAAAATCCATGCTGA 387 0.5607 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHTDPQPPDKPISHDGLSPSQLQKLPSITGKDILMGSECAVCLEEIATDQPARLVPGCNHTFHLECADTWLSKHPLCPLCRAKLDPTLFSSSENPC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01050 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 119 IPR013083 -
Lapu8g01050 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Lapu8g01050 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 124 - -
Lapu8g01050 128 SUPERFAMILY RING/U-box 60 118 - -
Lapu8g01050 128 SMART ring_2 71 112 IPR001841 -
Lapu8g01050 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01050 Lapu-Chr8 28525845 28527339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01050 1 128 C3H Transcription Factor Family AT5G42200 49.265 5.63e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01050 K19037 - gmx:100817919 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g01050 8 28525845 28527339 Lapu8g01050 8 28525845 28527339 ECH
Lapu8g01050 8 28525845 28527339 Lapu9g02322 9 37790103 37790973 PCT