Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01025 ATGGCAGAAGTGGAACTAGGTCCTGAACAGGGAGTTGCATCTAAAACGGACCAACAAACGAAAACTGAGAGTGTGTCGTTTTTTGGCTTGTTTGCTGCTGCTGATTCAACTGACTGTGTCTTAATGTTCCTTGGAAGTGTCGGTTCGTGTCTCCATGGTGCTGCTCTTCCTGTTTTCTTCATTTTGTTTGGTCGCATGATTGACTCTTTGGGACATCTTTCTAATAACCCTCACAAGTTGTCGTCACGAGTTTCTGAGCACGCTTTGTATTTGGTCTATCTTGGAGGAGTTGTTCTGGTATCTGCTTGGATGGGTGTAGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGTTTGAAATATTTGCAGGCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCTAATATCATTTTCCACATATCAAGCGATGCAATACTGGTACAAGATGCCATTGGTGACAAGACAGGCCACGCCATTCGTTACCTTTCCCAATTCATTGTTGGATTTGCCATTGGATTTACCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCACTGATAGCAGTAGCTGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAGGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTCGTAGGAGAAGAGAAAGCAATTGATTCATACTCAAAGTCTCTTGATAATGCTCTGAAGTTGGGGAAGAAGGGTGGTCTGGCAAAAGGAGTTGGAGTAGGCTTCACATATGGCTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCTAGCATACTTGTGAGGCATCACAAGACAAATGGAGGAAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCCAAAGGGCGTGCCGCTGCAGCCAATATCATGAACATGATTGCGTCCGCTTCAAGCAATTCTAAAAGGTTGGATGATGGCACTGTTGTGCCACAAGTTGCTGGGGAAATTGAATTTTGTGAGGTCTGTTTTGCTTATCCCTCAAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCCAGTGGTTCAGGAAAGAGCACGATTGTTTCACTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGGTTGGTTAGTCAAGAACCAGCACTATTTGCAACAACAATAGCTGGAAATATTTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTTCCATGGCTGCAAATGCCCATTCTTTTATTCAAGGATTGCCTGATGGTTATGAAACCCAGGTTGGAGAAGGTGGCACCCAACTCTCTGGGGGCCAAAAGCAAAGAATTGCCATAGCAAGAGCAGTGCTCAGAAACCCAAAAGTATTGCTTTTAGACGAGGCCACAAGTGCTCTAGATTCTGAATCAGAACTCATTGTCCAGCAGGCATTGGAAAAGATAATGTCAAACAGAACAACAATAGTTGTTGCTCATAGATTATCCACCATACGCGATGTAGATACAATTATTGTGTTGAAGAGCGGCCAGGTGGTTGAAAGTGGAACTCATTTGGAATTGATGTCCAACAATGGAGAGTATATGAATCTGGTGAGTTTGCAGGCATCACAAAACCTCTCAAACTCTAGATCAATATCTCGCTCTGAAAGTTCAAGAAATTCTAGCTTTAGAGAACCTTCAGACAACCTGACCTTAGAGGAGCAGTTGATGTTGGACACGAGAGAAGTGCAATCAAGTGATCAACACTTGCCATCAAAGACAACTTCAGCTCCAACAGTTTTGGATTTACTGAAACTGAATGCTCCAGAGTGGCCCTATGCAATACTTGGGTCAGTAGGTGCAATATTGGCTGGCATGGAAGCCCCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGAGTTCTAAAATCAAGCAAGAAGTAGATCGGGTCGCTTTTATATTTCTTGGAGTGGCTGTTATTACTATACCTATTTATCTATTGCTTCACTACTTTTATACATTAATGGGAGAGCATCTCACTGCCCGTGTACGTTTATTAATGTTCTCAGCTATTCTCAACAATGAAGTTGCATGGTTTGATAAGGATGAGAACAACACTGGCTCACTAACAGCCATGCTAGCTGCGGATGCAACATTAGTGAGAAGTGCTTTAGCTGATAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTCACAGCTTTTGTTATTGGCTTCACTTTGAGTTGGAAACTAACAGCTGTGGTTGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGATTATAGCCATGCTTACTCTAAAGCAACTTCTTTAGCTCGTGAAGCTATTGCCAACATACGAACTGTTGCTGCGTTTGGCGCCGAAGATCGAATCTCAATCCAGTTTGCATCTGAATTGAACAAACCTAACAAACAAGCTCTTCTAAGAGGCCACATATCAGGTTTTGGCTATGGCATAACCCAGCTATTGGCTTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTCAAGGGATCACAAGCACTGGGATCAGTTTTTGATATTTTGCAAAGGAGAACATCCATCAGCCCAAATGACCCGAACTCAAGGATTGTAAGTGTTGTCCAAGGAGAGATAGAGTTCAGAAATGTAAGCTTCAAGTACCCTATGAGGCCTGACATCACCATATTTCAGAACTTAAATCTCCGAGTCTCAGCAGGCAAGAGTCTGGCAGTAGTGGGACAAAGCGGTTCAGGGAAAAGCACAGTGATTTCTTTGGTAATGAGATTTTATGACCCTGATTCTGGATCAGTCCTTATAGATGAATGTGATATCAAAAGCCTAAACCTGAGATCCTTAAGGCGGAGAATAGGATTGGTTCAGCAAGAACCCGCTTTGTTCTCAACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTGATGAAGGCAGCCAGAGCAGCAAATGCTCATGAATTTATCAGCAGAATGCCTGAAGGGTACGAAACTGAGGTAGGTGAGAGAGGGGTGCAGTTGTCAGGAGGACAAAAACAAAGAGTTGCAATTGCTAGAGCTATTCTGAAAGATCCATCTATTCTTCTGTTGGATGAAGCAACAAGTGCTCTAGACACAGTATCAGAGAGGCTAGTCCAAGAAGCTCTAGATAAACTAATGGAAGGTAGAACAACAGTTCTGGTAGCTCACAGGCTGTCAACTGTTCGTGATGCAGACAGCATTGTAGTGCTGCAAAATGGCAGGGTTGCTGAAATGGGAAGCCATGAGAGGTTGATGGCCAAACCTCGAAGCATCTACAAGCAATTGGTTAGTCTACAGCATGAAACGCGTGATCAAGAAGACCATTGA 3738 0.4294 MAEVELGPEQGVASKTDQQTKTESVSFFGLFAAADSTDCVLMFLGSVGSCLHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAIDSYSKSLDNALKLGKKGGLAKGVGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDDGTVVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQASMAANAHSFIQGLPDGYETQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDSESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIIVLKSGQVVESGTHLELMSNNGEYMNLVSLQASQNLSNSRSISRSESSRNSSFREPSDNLTLEEQLMLDTREVQSSDQHLPSKTTSAPTVLDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQSSKIKQEVDRVAFIFLGVAVITIPIYLLLHYFYTLMGEHLTARVRLLMFSAILNNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFDILQRRTSISPNDPNSRIVSVVQGEIEFRNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGSVLIDECDIKSLNLRSLRRRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAARAANAHEFISRMPEGYETEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTVLVAHRLSTVRDADSIVVLQNGRVAEMGSHERLMAKPRSIYKQLVSLQHETRDQEDH* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01025 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu8g01025 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1236 IPR027417 -
Lapu8g01025 1245 Pfam ABC transporter transmembrane region 677 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu8g01025 1245 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu8g01025 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
Lapu8g01025 1245 Gene3D - 989 1245 IPR027417 -
Lapu8g01025 1245 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Lapu8g01025 1245 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lapu8g01025 1245 SUPERFAMILY ABC transporter transmembrane region 664 976 IPR036640 GO:0005524|GO:0016020
Lapu8g01025 1245 SUPERFAMILY ABC transporter transmembrane region 38 339 IPR036640 GO:0005524|GO:0016020
Lapu8g01025 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Lapu8g01025 1245 FunFam ABC transporter B family member 4 356 610 - -
Lapu8g01025 1245 PANTHER ABC TRANSPORTER B FAMILY 15 687 IPR039421 -
Lapu8g01025 1245 SMART AAA_5 1025 1211 IPR003593 GO:0016887
Lapu8g01025 1245 SMART AAA_5 392 578 IPR003593 GO:0016887
Lapu8g01025 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1234 IPR003439 GO:0005524
Lapu8g01025 1245 Pfam ABC transporter 1017 1165 IPR003439 GO:0005524
Lapu8g01025 1245 FunFam ABC transporter B family member 4 988 1243 - -
Lapu8g01025 1245 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Lapu8g01025 1245 Gene3D ABC transporter type 1, transmembrane domain 29 967 IPR036640 GO:0005524|GO:0016020
Lapu8g01025 1245 Gene3D - 356 603 IPR027417 -
Lapu8g01025 1245 CDD ABC_MTABC3_MDL1_MDL2 998 1236 - -
Lapu8g01025 1245 MobiDBLite consensus disorder prediction 610 629 - -
Lapu8g01025 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu8g01025 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Lapu8g01025 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Lapu8g01025 1245 ProSitePatterns ABC transporters family signature. 1137 1151 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01025 Lapu-Chr8 28339934 28345594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01025 8 1242 Calmodulin-binding Proteins AT2G36910 49.365 0.0 1220