Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01023 ATGGCGCTAAGCAAGTTTTTCAACTGGAACACTCTTCAAATTCTCGATTCAGAAAGCGAAAGCACCTTTAATGAAGCTATGCCAGAAGAAGTGGCACCAAATATCCAGCACTTATTTCCCTACCCAGATGAAAGCTTTTTCCTTTCAAATGCGTTTTTTGATAACTACATTGACCCAAATGGCGGTTTTCTCTATCCTTCAGATATTCAGTCTCCCTTTGATCCTTTCATTCCACTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACGATCCTCTCCCGTGCCCAAAACGCCAAAAATTCTGCTGCGAGGAACAACTAGTACAACACCCAGAGGAGCTTATTACAACACCAACAATGCCATCCAATCATATAGATGGGTTTCTTCTACCTTACCATAATAATGGTTACTCCTTTCTCTCAGAGGAGAGACAACAGCAATTATTTCCTTGTATGGATCTTCAATGTGAAGAGAAAGATAGGGAGAGAACCATATCTCCACAGAGCGTCGCGGCAAGAGAAAGAAGAAGAAAGATAACGAATAAGACACAAGAGCTTAGTAAATTGGTTCCTGGTGGAACAAAAATGAACACAGCTGAGATGCTTCATTCAGCTGCAAAGTATGTTAAGTACCTTCAAGTTCAAGTTGAGATGCTTGAACTCATGAACTCATTAGAGTATGATGAAGATAAAGAAGCACCTCCTTCTGATACTCTACACGCTCTGGTTGTTTCTCCTTTTGTTCAAGAGAAGTTGTATGAGGGGGAAAGCTGCTTTCTGCCAAAAGAAACTGTCACCACTTTGATCAATCACGAAGATCTTCAATCAAGACCTACGGTCCTTGAGGATCTTAAACAGCTCATTGGAACAGACATTAAGAAAGCAGAGCAAGAATAA 900 0.4067 MALSKFFNWNTLQILDSESESTFNEAMPEEVAPNIQHLFPYPDESFFLSNAFFDNYIDPNGGFLYPSDIQSPFDPFIPLPHHQIFPTHEDYDPLPCPKRQKFCCEEQLVQHPEELITTPTMPSNHIDGFLLPYHNNGYSFLSEERQQQLFPCMDLQCEEKDRERTISPQSVAARERRRKITNKTQELSKLVPGGTKMNTAEMLHSAAKYVKYLQVQVEMLELMNSLEYDEDKEAPPSDTLHALVVSPFVQEKLYEGESCFLPKETVTTLINHEDLQSRPTVLEDLKQLIGTDIKKAEQE* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01023 299 Gene3D - 161 232 IPR036638 GO:0046983
Lapu8g01023 299 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 167 260 IPR045843 GO:0003700|GO:0006355
Lapu8g01023 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 223 IPR036638 GO:0046983
Lapu8g01023 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lapu8g01023 299 SMART finulus 170 219 IPR011598 GO:0046983
Lapu8g01023 299 Pfam Helix-loop-helix DNA-binding domain 174 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01023 Lapu-Chr8 28324816 28326083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01023 36 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 33.708 1.06e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g01023 HLH 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01023 - - pvu:PHAVU_001G006100g 414.075