Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00997 ATGAAGATCCAATGCGACGTGTGTAACAAACACGATGCATCGGTCTTTTGCACCGCCGATGAAGCTGTTCTCTGTGACGGCTGCGACCACCGCATCCACCATGCCAACAAACTAGCCTCCAAACACCAACGTTTCTCTCTTCTTCGACCTAAACAACATCCTCTCTGCGATATTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGAGAGTGTGACGTGTCGGTTCACTCTGCGAACGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCTGCTTCTTCTTCATCACAAGAAACTACCTCTCCTACAAACTCAACCCCTGATTCTCTTCTTGACGTTTCGCATCAAAAAACAATACCTTTATCTTCCGCCATGAGTAAGGTTGGCGTTGAAGCAACGGGTTCCACAAGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCGTATTCTGTTCCCTTTGGTTTCTCTAAGAGTGATGAATTGTTGCCACGGTTTGATGGTGACATGGAGGGTCATCTGGGTTCCTTCTCAACCGAGAACGCAGGGATATGGGTTCCTCAAGCGCCACCACCCCTTCTGAGTTCTTCACAGATGGATAGAGTGATTGGTCAAAGTGAGACCAACATCAAAGGTAACAGGTCGAGGTTGAGGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCCAATTCCAAGAGAGGCAGGTTTCTATGGTAG 795 0.4742 MKIQCDVCNKHDASVFCTADEAVLCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDICQERRAFTFCQQDRAILCRECDVSVHSANEHTLKHDRFLLTGVKLSASSSSQETTSPTNSTPDSLLDVSHQKTIPLSSAMSKVGVEATGSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFSKSDELLPRFDGDMEGHLGSFSTENAGIWVPQAPPPLLSSSQMDRVIGQSETNIKGNRSRLRDDNFTVPQISPQSNSKRGRFLW* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00997 264 Gene3D Classic Zinc Finger 1 93 - -
Lapu8g00997 264 SMART bboxneu5 51 98 IPR000315 GO:0008270
Lapu8g00997 264 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu8g00997 264 CDD Bbox1_BBX-like 5 47 - -
Lapu8g00997 264 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 257 - -
Lapu8g00997 264 FunFam B-box zinc finger protein 21 1 96 - -
Lapu8g00997 264 CDD Bbox1_BBX-like 55 98 - -
Lapu8g00997 264 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Lapu8g00997 264 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu8g00997 264 MobiDBLite consensus disorder prediction 231 264 - -
Lapu8g00997 264 MobiDBLite consensus disorder prediction 107 126 - -
Lapu8g00997 264 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Lapu8g00997 264 MobiDBLite consensus disorder prediction 243 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00997 Lapu-Chr8 28077237 28079152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00997 1 264 C2C2-CO-like Transcription Factor Family AT1G75540 46.847 4.78e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu8g00997 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00997 - - gmx:100807827 429.483