Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00996 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGAAGAAGAGGATCAGAGAGAGGACAACAACAACAGTCAATTTTTGTTCAGAAACGTTAACGAGGAGATCTACAACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACAACAACCATAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCCAACCGCTTTGGGTTCACGGTTATGAGGTCCGGTGGCGGCGTAGGTGGCGGCGGAGCCGGCATGAACTGTCAGGACTGCGGGAACCAAGCGAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGCGTTGCAGCAGCAAAATCAACCACCGCAGTTTCGTGGAGATCACTCGAAACGACACAGAGAAAGTATCGAAGGTGCTGCAGCTGGTGGTTCTTCTCTCGCTTGCGCTCCAGTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTACCAAACCGCGGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGCCACTCACCCTCATGGCAGCCACGACCACCGCCACAACAGCCGGGAACCCTTTTGACGCTTCACTCTACACGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 978 0.5399 MAGFFSLGGRHNKAEEEEDQREDNNNSQFLFRNVNEEIYNNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNNNHSSSNNVNDDVSVSFSDESNRFGFTVMRSGGGVGGGGAGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQFRGDHSKRHRESIEGAAAGGSSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVDGPYASAGCEGSSGGGGEARPLTLMAATTTATTAGNPFDASLYTAPMNAFMAGTQFFPPPRS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00996 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 297 IPR007818 GO:0003700|GO:0006355
Lapu8g00996 325 Pfam Domain of unknown function (DUF702) 114 264 - -
Lapu8g00996 325 MobiDBLite consensus disorder prediction 1 27 - -
Lapu8g00996 325 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Lapu8g00996 325 MobiDBLite consensus disorder prediction 163 177 - -
Lapu8g00996 325 NCBIfam LRP1 C-terminal domain 215 263 IPR006511 -
Lapu8g00996 325 MobiDBLite consensus disorder prediction 158 187 - -
Lapu8g00996 325 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00996 Lapu-Chr8 28051982 28053422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00996 1 324 C2H2 Transcription Factor Family AT1G19790 48.219 1.77e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu8g00996 DUF702 7.8e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00996 - - gmx:100794846 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00996 8 28051982 28053422 Lapu9g02265 9 37223154 37224908 PCT