Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00984 ATGTATTCAAACCAAGCTTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCTCATATCTATAGTGAAACCGTTGGAGGACAAAATGAGTTGAAGTTCATCACATCCATGAGGGACACAATGACTGTGCAACCTATTGATGGGCATTCAAATGCGGTCCCCACAGGTGATCAAGACTCTTTTGCCAATGCTGGAGATTCCCATTCCCATGTTATTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCAGTTTCTCCTCACTAATGACTGCTTCTGTCCCAAATTTAAAGGGCTCTTCATCTCTTAAAGATGATGAAGCCAGCCTACAGAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAGCACCCCTCAATGTGCCTCAGTGAAGGCCAGAGCGATGGATCACTAGGCTTTTCCAGCAGTGTCTTGAACTCTCAATACCTCAAGGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAAAAGCAACAGAGTTTCCCGGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCGGCCAATCAGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACTCTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTGGTTGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCTGCTGAACCATACACTGCTCTTGCCTTGCGCACAATTTCACGCCACTTTCGGTGTTTACGTGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTAGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCGAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTTATTAATGCAAGGGTGCGGCTCTGGAAGCCAATGGTTGAAGAAATATATAAAGAAGAATTTGGCGATTCTGAGATGAGCAGCAACCTATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTTGATGATACTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGACAGAGGGATCCAAAGTAGTGATGATGGAGAAAATGCCATGGAACCTCGAATTGGGAAAATGCAGGGTGACCAAAGGTTCAACAGGAACAACAGCAATAGTCCTTACTATGGGGGGGAAGGATACATAATAGCTCCTACTCCTGCCACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAAGTGTCACTTGCATTGGAATTGAGGAACTGTGAAAGTGAACGGTTTGGTGTCTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCTCAGAGGCTGATTTGCTAGATTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1917 0.4403 MYSNQAFSSGSYADMLSGNPLLPHIYSETVGGQNELKFITSMRDTMTVQPIDGHSNAVPTGDQDSFANAGDSHSHVIPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGASFSSLMTASVPNLKGSSSLKDDEASLQRELRNAECMASLASCGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFPDIGLDGSKDSDGKSTGQSGQISSCPNSSAANSSCELSPAERQNLVDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNLLSSENTLKAPRDDVQSSDSKREESQDNIITVDDTVIQHHGLKLDHASELDRGIQSSDDGENAMEPRIGKMQGDQRFNRNNSNSPYYGGEGYIIAPTPATYDLSELGNIGVGGQVSLALELRNCESERFGVSNDDMHRRRKKTLASSSEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00984 638 Coils Coil 137 157 - -
Lapu8g00984 638 SMART prehox3 191 341 IPR006563 -
Lapu8g00984 638 MobiDBLite consensus disorder prediction 472 488 - -
Lapu8g00984 638 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Lapu8g00984 638 MobiDBLite consensus disorder prediction 455 488 - -
Lapu8g00984 638 Coils Coil 203 223 - -
Lapu8g00984 638 CDD homeodomain 382 443 IPR001356 GO:0003677
Lapu8g00984 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 477 - -
Lapu8g00984 638 MobiDBLite consensus disorder prediction 230 267 - -
Lapu8g00984 638 SMART HOX_1 382 446 IPR001356 GO:0003677
Lapu8g00984 638 MobiDBLite consensus disorder prediction 242 267 - -
Lapu8g00984 638 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Lapu8g00984 638 MobiDBLite consensus disorder prediction 456 471 - -
Lapu8g00984 638 Gene3D - 379 456 - -
Lapu8g00984 638 SUPERFAMILY Homeodomain-like 383 448 IPR009057 -
Lapu8g00984 638 Pfam Associated with HOX 197 340 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00984 Lapu-Chr8 27943356 27948122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00984 192 467 Homeobox Transcription Factor Family AT2G16400 61.888 4.70e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu8g00984 POX 4e-51 No_clan