Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00973 ATGTCAGGGCCGCTTGATCGGTTCGCACGTCCCTGCTTTGAGGGGTTTTCTGGTCATGATGAAAGGAGGGAGAGGAGATCGGATTTTGAGAATTCAGAGGATGATCGGCGAACGAGGATTGGTAGTTTGAAAAAGAAAGCAATCAATGCGTCAAGCAAGTTCAGGCATTCTCTTAGGAAGAAGAGCAGCAGGAGGAAGAGTGCGAGCCGAAGCAATTCGGTCTCCATTGAGGATGTTCGAGATGTTAAGGAGCTCCAAGCAGTGGATGCTTTTCGACACGCGCTTATGTCGGATAACTTGTTGCCGTCCAGACATGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACTGATACGATTATGGAGGATTTTGAATTCAGTGAGTCGAATGAAGTCCTGCAGTACTATCCACATGGTTATCATGGTGTGGATAAGGATGGAAGACCTGTTTATATTGAAAGGTTAGGCAAAGTTGATCCCAGTAAGCTTATGCAAGTGACTACCATAGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCGTGTTCTATTGCTGCAAAGAGACATATAGATTCAAGTACGACCATTTTGGACGTTCATGGTGTGGGTTTCAAAAACCTAACCAAATCTGCACGGGAACTCATCATGCGGCTGCAGAAAATTGATGGTGATTACTATCCAGAAACCTTATGTCAAATGTTTATAATCAACGCTGGTCCTGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAACAAATTACTTGAAATTATTGATGCGAGTGAGCTGCCTGAGTTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCAGATAAGGGTCCATGGCAGGATCCAAACATTTTAAAGATGATTCTTAGTGGCGAAGTGCAATGTTCAAGGCAAATAGTAACGGTTTCTAACGATGAGGGAACCATTATTGAATGCGATAAGGCATGCTTTCCAATGCCGATAAGAAGTAGTGACACATCAACAGCAGAATCAGGATCCGAAGTCGAAGATATCTCTTCTCCCAAAGCAAGTGGAAATTATACAAACCCTAGGTTAACTCCTGTCCATGAAGAGGCGAGATTGATCGGTAAGGCTAGTCTTTCTGGCGGTTTCTCTGAGTATGATGAGTTTATTCCCATGGTTGACAAGGCTGTTGACCAGGGATGGAAGGAGAAACAAGTAACAACTCAAAACTCGTATGGCTCAACAGAAAATTTCCTGTTGAGGACTGGAAAATCTGGTGGAAACTGTGCACATATCTGGGTTGTTATTGTGGGCTTCTTTGTTGCCATCTTCACTATTGCTCGTTCACTAGCATTTCATGTGACTAAGAGAATAAAGGACACTAAATCTGATTCTGACAAAAATACGCCTAACTTGATCGTTGATTCAATAACCAAGGAAGAATCTCGTCCCCCATCACCTGTTCCTAGATTAGCAAAGACAGAACTCGTCTCATCTGCTTTGAAACGCCTTGGTGAGCTCGAAGAGAGGGTTGACATGCTACAATCAAAACCTAATGTGATGCCATATGAGAAAGAGGAGCTGCTGAATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAACTGATTGCTACGAAGAAGGCTTTATATGAAGCTTTGATCAGACAAGAAGAACTTCTGGCATATATAGATAGTCAGGAAAGAAATAAATTCGAGAAAAAGAAGTTTTGCTGGTGA 1881 0.42 MSGPLDRFARPCFEGFSGHDERRERRSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSSRRKSASRSNSVSIEDVRDVKELQAVDAFRHALMSDNLLPSRHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIMEDFEFSESNEVLQYYPHGYHGVDKDGRPVYIERLGKVDPSKLMQVTTIERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNLTKSARELIMRLQKIDGDYYPETLCQMFIINAGPGFKLLWNTVKSFLDPKTTSKINVLGNKFQNKLLEIIDASELPEFLGGSCTCIDQGGCMRSDKGPWQDPNILKMILSGEVQCSRQIVTVSNDEGTIIECDKACFPMPIRSSDTSTAESGSEVEDISSPKASGNYTNPRLTPVHEEARLIGKASLSGGFSEYDEFIPMVDKAVDQGWKEKQVTTQNSYGSTENFLLRTGKSGGNCAHIWVVIVGFFVAIFTIARSLAFHVTKRIKDTKSDSDKNTPNLIVDSITKEESRPPSPVPRLAKTELVSSALKRLGELEERVDMLQSKPNVMPYEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDSQERNKFEKKKFCW* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00973 626 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Lapu8g00973 626 SMART sec14_4 152 323 IPR001251 -
Lapu8g00973 626 Coils Coil 544 564 - -
Lapu8g00973 626 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
Lapu8g00973 626 Gene3D - 57 139 - -
Lapu8g00973 626 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Lapu8g00973 626 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Lapu8g00973 626 MobiDBLite consensus disorder prediction 49 67 - -
Lapu8g00973 626 CDD SEC14 154 320 IPR001251 -
Lapu8g00973 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Lapu8g00973 626 Gene3D - 140 350 IPR036865 -
Lapu8g00973 626 MobiDBLite consensus disorder prediction 382 409 - -
Lapu8g00973 626 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Lapu8g00973 626 MobiDBLite consensus disorder prediction 1 75 - -
Lapu8g00973 626 FunFam SEC14 cytosolic factor 140 352 - -
Lapu8g00973 626 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Lapu8g00973 626 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Lapu8g00973 626 MobiDBLite consensus disorder prediction 508 536 - -
Lapu8g00973 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 614 - -
Lapu8g00973 626 MobiDBLite consensus disorder prediction 13 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00973 Lapu-Chr8 27864136 27869720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00973 111 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.972 2.19e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00973 K26544 - gmx:100812774 1127.85