Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00959 ATGCCATTCAGGAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATCAGCAACATGTATAGGAGAGGAGGAGAGGGCAAGCATGGGCATCGCCATGGAAAATCTCACATTGCACCGGAATGTTCCCTACCATCCTCCTCCTCCTCCTCATCGTCATCATCTTCTTCTTCTTCATCACAGAGCCGATGGGCTAACTTACCTCCTGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCCTGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAAGAGTGTGGTTTGCTCACTTTTCCCATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGAACTAGCAACTCTTACATTGGAAAGTTGAGGTCTAATTTTCTGGGCACCAAATTCACGATCCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAAAGTCCATCTGAAGCAGGTTCTTCCTAAGGTTGCTGCTGCTAACTACAAAGTAGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGAGGTGTACGATGCACTTGATACCCATATCTGCAATCCAAGAAGGAGGGAGTGCCCCTACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATCTATCTACTACCACCACCTCTGACTCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTTGACACAACTGACTGTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGTCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTCATACTACAATTTGGAAAAATTGGGAAGGACATATTCACTATGGATTACCGATACCCCCTCTCGGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1284 0.4502 MPFRSIVRELKEIGEGISNMYRRGGEGKHGHRHGKSHIAPECSLPSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEECGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNSYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQKVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHLSTTTTSDSKGKKPEVVEFDTTDCENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00959 427 Pfam Tub family 125 422 IPR000007 -
Lapu8g00959 427 MobiDBLite consensus disorder prediction 20 63 - -
Lapu8g00959 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Lapu8g00959 427 SUPERFAMILY Tubby C-terminal domain-like 113 427 IPR025659 -
Lapu8g00959 427 Gene3D - 57 110 - -
Lapu8g00959 427 CDD F-box_AtTLP-like 64 108 - -
Lapu8g00959 427 Gene3D Tubby Protein; Chain A 122 427 IPR025659 -
Lapu8g00959 427 SUPERFAMILY F-box domain 52 108 IPR036047 GO:0005515
Lapu8g00959 427 PANTHER TUBBY-RELATED 36 425 - -
Lapu8g00959 427 Pfam F-box domain 64 111 IPR001810 GO:0005515
Lapu8g00959 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 245 272 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 180 196 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Lapu8g00959 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lapu8g00959 427 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00959 Lapu-Chr8 27761395 27767296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00959 17 427 TUB Transcription Factor Family AT1G47270 60.577 5.51e-171 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu8g00959 Tub 5.6e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00959 K19600 - gmx:100796250 754.592