Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00952 ATGGGAATGGGGGGAATTGCAGTGAGTGTGGTTTCATTGTGGTTGTTAATGGTTGGGTTAACAATGGGAATGGGTTTGAGTTCGAGAACGGAATGGTTCGCGTTAAGGGAACTTCGATCGTCGTTGGGGATTAGGGCAAAGTATTGGCCCCTAAAAGCCGAACCGTGCGGGAACTGGACCGGGGTTCAGTGCCGGAAGGGTCGAGTTGTGGGTATAAACGTGTCCGGTTTGAGGAGAACTCGGTTGGGTAGCCTTAATCCAAGTTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTAGAATCGTTTAATGCTTCTAGGTTTGTGCTCAAAGGGTCTATTCCTGAGTGGTTGGGTGAGAGAATGAGGGTGTTGGATGTCCTTGACCTTAGGCTTTGTTCCATAACGGGTTTGATTCCTTATTCAATTGGGGAGTTGAGTGCGTTGAGGGTTTTGGTGCTTTCTGGGAATTCTCTCACTGGTAGAATGCCTTCAACGCTTGGGAACCTCACAAGGCTTTCTGTTCTTGATCTCTCTGGTAACTCTCTTTCAGGGTATGTGCCTGATTCTGTGTCTAAACTTGGGAATCTCACAAGCCTTGATCTTTCTGACAATTACTTGTCTGAGTCTGTTCCACCTGAACTGGGTGCCCTTTCAAGTCTTCAAAAGTTGAACCTTTCTGGGAATTCTTTTACTGGGTCGGTTCCCTCTGAGCTGGGTAACCTTTCTGAGTTGGTTGAGGTTGATCTTAGTATGAATTTTCTGTCGGGGCTGTTTCCGGGTGATTTCATTTTTTCTCGGCTCTTGGCCCTGGAGGTTCTCATTCTCAGAGGGAATTCGTTTGATGGTGCTCTTCCTGATAATTTTAGGCCAACGCCCAGGTTGAGCTTTCTTGATGTGTCCAGTAACAACCTCACTGGGACACTGCCGAATTTCACAAGTTTGAATCGCTCTGCTCGTATTGTGTTCAATTTGTCAAACAATTTCTTCTATGGACTTCTGAACACTTCACTGAACATGTTTAAAACTATAGATTTGTCAGGTAATTATTTGGAAGGTGAGGTGCAAGGGGGTGGTAATGTTAGTCTGGATAGAAATTGCCTACAGATGACTCCAAACCAGAGGACTTTGGAAGAGTGTAGAGATTTTTATTTTGCAAGAAATTTACCCTTTGCATTCCCAGAATCTAAGTCCGGGAGCGGCAGAAGGGTGGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGCGGTGCTGACATTGGTCCTCATGCTGGTTCTAAGACAATGTCACAATCGCAGAAGCTTGAAAGTTCAAAGGGGGACCAAAGATGAGGGACCTGTTCAGGAAGGGGAAAGCCCTATACCTCCTAAGGATGTTGACTTTGTGATTGGCGTGGGAGAAGCATTTAGTTCTGAGCAAATGCTCCATTTAACTGGCAATTTTGCTGAAGCAAATATCATAAAGCATGGCCATTCCGGGGTCCTCTTCTTGGGAGTCTTGGAAGGTGGAGCAACTGTGGTAATAAAAAGGATAGATTTGAATTTATTCAAGAGAGAATCATACGTAGTGGAATTGAGACTATTAAGTAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTTGGACAATGAGAATGAGAAATGTATAGTTTACAAATACATGCCAAATAGAGATTTGGCTACTTCTTTGCACAGACTCAATGGTTCAGATGGTAAATTACAGTCCTTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTGGCTTACCTTCATGAGTGCAGCCCTCCCCTTGTCCACAGAGATGTTCAAGCTAGCAGTATCCTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCCAGGTTACCGTCCAAGGAGATGTTCAACAGGGAGTCATCTCAAGGGTTTTCAGCAAGCCAGCACCTTCTAATGAAGGTGATCCTGGGAAATCGTCAGTAACATGCAGTTACGACGTGTACTGTTTTGGGAAGATTTTACTGGAACTCATTACTGGTAACATTGAAATTAGCAAGTCAGATGATGGAACTACAAAAGAGTGGTTAGACCAAACCTTGCCTTACATAACTCTATACGATAAAGAACGGGTGACTAAGATTGTTGACCCACAATTGATCGTGGATGATGACCTATTGGAAGAGGTATGGGCTATGGCAATTGTGGCCAATGCATGCTTGAATCCCAAGCCTTCCAAACGTCCTCCCATGAAACATGTCCTGAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATACTAGCTCGGCAAAATTGAGAACCAGCTCTTCTAGGAAATCTTGGAGCACAGCGTTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGTTGTGGCCGTGACACGTACAAACAAAGAGAGTACCAGTGATACTAAAAAATCAAGAGTAGGTTCTCAAAGTAGTGGAAATGATCACTCATCTTCCAATAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAATGCTAGATGTGGAGACTGGAGAGGCAAGATAA 2577 0.4397 MGMGGIAVSVVSLWLLMVGLTMGMGLSSRTEWFALRELRSSLGIRAKYWPLKAEPCGNWTGVQCRKGRVVGINVSGLRRTRLGSLNPSFEVGSLVNLTLLESFNASRFVLKGSIPEWLGERMRVLDVLDLRLCSITGLIPYSIGELSALRVLVLSGNSLTGRMPSTLGNLTRLSVLDLSGNSLSGYVPDSVSKLGNLTSLDLSDNYLSESVPPELGALSSLQKLNLSGNSFTGSVPSELGNLSELVEVDLSMNFLSGLFPGDFIFSRLLALEVLILRGNSFDGALPDNFRPTPRLSFLDVSSNNLTGTLPNFTSLNRSARIVFNLSNNFFYGLLNTSLNMFKTIDLSGNYLEGEVQGGGNVSLDRNCLQMTPNQRTLEECRDFYFARNLPFAFPESKSGSGRRVVFILVGIFGGLGFIAVLTLVLMLVLRQCHNRRSLKVQRGTKDEGPVQEGESPIPPKDVDFVIGVGEAFSSEQMLHLTGNFAEANIIKHGHSGVLFLGVLEGGATVVIKRIDLNLFKRESYVVELRLLSKVSHARLVPILGHCLDNENEKCIVYKYMPNRDLATSLHRLNGSDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSQVTVQGDVQQGVISRVFSKPAPSNEGDPGKSSVTCSYDVYCFGKILLELITGNIEISKSDDGTTKEWLDQTLPYITLYDKERVTKIVDPQLIVDDDLLEEVWAMAIVANACLNPKPSKRPPMKHVLKALENPLKIVREENTSSAKLRTSSSRKSWSTAFFGSWRHSSSDSVVAVTRTNKESTSDTKKSRVGSQSSGNDHSSSNKRSSNEIFPEPLEMLDVETGEAR* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00952 858 Pfam Leucine rich repeat 125 183 IPR001611 GO:0005515
Lapu8g00952 858 MobiDBLite consensus disorder prediction 819 841 - -
Lapu8g00952 858 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 288 - -
Lapu8g00952 858 SMART LRR_typ_2 170 193 IPR003591 -
Lapu8g00952 858 SMART LRR_typ_2 218 242 IPR003591 -
Lapu8g00952 858 SMART LRR_typ_2 194 217 IPR003591 -
Lapu8g00952 858 SMART LRR_typ_2 146 169 IPR003591 -
Lapu8g00952 858 SMART LRR_typ_2 268 291 IPR003591 -
Lapu8g00952 858 FunFam Putative LRR receptor-like serine/threonine-protein kinase 560 781 - -
Lapu8g00952 858 Gene3D Transferase(Phosphotransferase) domain 1 560 786 - -
Lapu8g00952 858 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 207 760 - -
Lapu8g00952 858 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 187 - -
Lapu8g00952 858 SUPERFAMILY Protein kinase-like (PK-like) 467 761 IPR011009 -
Lapu8g00952 858 Pfam Protein tyrosine and serine/threonine kinase 490 760 IPR001245 GO:0004672|GO:0006468
Lapu8g00952 858 ProSiteProfiles Protein kinase domain profile. 484 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00952 858 FunFam Predicted protein 456 559 - -
Lapu8g00952 858 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Lapu8g00952 858 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Lapu8g00952 858 Gene3D Ribonuclease Inhibitor 190 389 IPR032675 -
Lapu8g00952 858 MobiDBLite consensus disorder prediction 806 858 - -
Lapu8g00952 858 Gene3D Phosphorylase Kinase; domain 1 461 559 - -
Lapu8g00952 858 SUPERFAMILY L domain-like 75 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00952 Lapu-Chr8 27703586 27709183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00952 20 652 Miscellaneous Gene Families AT2G16250 48.669 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Lapu8g00952 PK_Tyr_Ser-Thr 8.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00952 - - gmx:100798381 1348.18