Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00931 ATGGCCCTAACCTCTGCACTCTTTCACCTTCTCCCCCTTTTATTATTAGGTAATGTAGCATCTGCCACATTGATTACCCTCCAAAACCGTTGCAGTTACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGTCGCCACTCTCGGCGACGGCGGTTTCCCCATGGCGCCAGGTTCGGAGGTTAAGCTCACCGCACCGTCCGGCTGGTCAGGCCGGTTTTGGGCCAGGACCGGCTGCAGCTTCGACGGCTCCGGCATCGGAACATGCGCCACGGGAGACTGCGCCGGGGGCCTGAAATGCACCGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACTATTGGATCCTCCGGCAACGGCAACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACCGGGGGAACCGGTGACTGCCAGTACGCAGGGTGCGTGGCGGACCTGAACGGCGCGTGTCCGGCGGAGCTTCAAGTTAGAGACGGCGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCGCGGCATTTAACACGGCGGAATTTTGCTGCACCGGCGAGCACGGGACGCCGCAAACGTGTTCGCCGACACATTATTCGGAGATTTTCAAGAGTGCGTGTCCAACAGCTTACAGTTATGCATACGATGATGCTTCAAGCACTTTGAAAATGATGGCCCTAAACCCAAACTCAAAAGCCTTTGCACTCATCCACTTCCTCCTCTTCTTATTAGGTAATGTAGCATCTGCCACGGTGTTTACCCTCCAAAACCGTTGCAGTTACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGTCGCCATTCTCGGCGACGGCGGTTTCCCCCTGGCTCCAGGTACGGAGGTTCAACTCACCGCACCGTCCGGCTGGTCCGGCCGGTTCTGGGCAAGGACCGGCTGCAGCTTCGACGGTTCCGGCATCGGAACATGCGCCACCGGAGACTGCGCCGGTGGACTGAGGTGCATCGGAGGAGGCGTTCCGCCGGCGACTCTGGCGGAGTTCACCGTCGGATCCGCTGGTAACGGAGACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTAGGCATCGGCGTGCTGGCTACCGGAGGAACCGGTGACTGCCAGTACGCGGGGTGCGCGGCGGACTTGAACGCCGTGTGTCCGGAGGAGTTGCAGGTGAAAGACGGCGGTGGCGCGGTGGTGGCGTGCAAAAGCGCGTGCGCGGCATTTAACACGTCGGAGTTTTGCTGCACCGGCGAACACGGGACGCCGCAAACATGTTCGCCGACACATTTTTCGGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTATGCTTACGATGATGCTACCAGTACTCGCACGTGTTCGGGATCTGATTATATTATCGCTTTTTGCCCTTAA 1440 0.5931 MALTSALFHLLPLLLLGNVASATLITLQNRCSYTVWPGTLSGNGVATLGDGGFPMAPGSEVKLTAPSGWSGRFWARTGCSFDGSGIGTCATGDCAGGLKCTGGGVPPVTLVEFTIGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGACPAELQVRDGGGAVVACKSACAAFNTAEFCCTGEHGTPQTCSPTHYSEIFKSACPTAYSYAYDDASSTLKMMALNPNSKAFALIHFLLFLLGNVASATVFTLQNRCSYTVWPGTLSGNGVAILGDGGFPLAPGTEVQLTAPSGWSGRFWARTGCSFDGSGIGTCATGDCAGGLRCIGGGVPPATLAEFTVGSAGNGDKDFYDVSLVDGYNVGIGVLATGGTGDCQYAGCAADLNAVCPEELQVKDGGGAVVACKSACAAFNTSEFCCTGEHGTPQTCSPTHFSEIFKNACPTAYSYAYDDATSTRTCSGSDYIIAFCP* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00931 479 ProSiteProfiles Thaumatin family profile. 22 229 IPR001938 -
Lapu8g00931 479 Pfam Thaumatin family 265 479 IPR001938 -
Lapu8g00931 479 Pfam Thaumatin family 29 232 IPR001938 -
Lapu8g00931 479 PANTHER OS03G0233200 PROTEIN 248 479 IPR001938 -
Lapu8g00931 479 PRINTS Pathogenesis-related protein signature 308 319 IPR001938 -
Lapu8g00931 479 PRINTS Pathogenesis-related protein signature 469 478 IPR001938 -
Lapu8g00931 479 PRINTS Pathogenesis-related protein signature 260 272 IPR001938 -
Lapu8g00931 479 PRINTS Pathogenesis-related protein signature 321 350 IPR001938 -
Lapu8g00931 479 SMART tha2 261 479 IPR001938 -
Lapu8g00931 479 SMART tha2 25 237 IPR001938 -
Lapu8g00931 479 ProSitePatterns Thaumatin family signature. 85 100 IPR017949 -
Lapu8g00931 479 ProSitePatterns Thaumatin family signature. 321 336 IPR017949 -
Lapu8g00931 479 ProSiteProfiles Thaumatin family profile. 258 479 IPR001938 -
Lapu8g00931 479 FunFam Thaumatin-like protein 1a 259 479 - -
Lapu8g00931 479 SUPERFAMILY Osmotin, thaumatin-like protein 24 230 IPR037176 -
Lapu8g00931 479 CDD TLP-PA 260 478 - -
Lapu8g00931 479 CDD TLP-PA 25 229 - -
Lapu8g00931 479 FunFam Thaumatin-like protein 1a 23 242 - -
Lapu8g00931 479 SUPERFAMILY Osmotin, thaumatin-like protein 260 479 IPR037176 -
Lapu8g00931 479 Gene3D Thaumatin 259 479 IPR037176 -
Lapu8g00931 479 Gene3D Thaumatin 23 240 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00931 Lapu-Chr8 27512437 27518891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00931 242 479 Receptor kinase-like Gene Family AT5G38280 44.980 1.44e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00931 - - lang:109331061 482.641