Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00924 ATGGGGAGAGAGTTACCACAGTCTCCTTGCCTAACGGATTTGGAGCCAGACAGAATCAGTTACTTACCGGGTCATGTGATTGACCAAATTTTGTCACATTTGTCAATTAAGGAAGCAGTGAGAACAAGTGTTTTATCTAGCAAATGGAGGTACAGATGGGCCACGCTACCGAATCTTGTGTTCGATAACCAATGTCTCTCTGTGGCTGCTCAGGACCATGTGACTATCAAGAACAAGCTTTTGAGAACTGTTGATCATGTACTGCTACTTCATTCCGGGTCAATCAACAAGTTCAAGCTCTCCCATCGTGATCTCCTTGGTGTGGCTGATATTGATCGTTGGACGCTTCATTTATGCAGAAAGTCTATTAAAGAGTTTGTGCTGGAAATCTGGAAAGGACAGCGCTATAAGATACACTCGTGTTTATTTTGTTGTCAAAGTTTGACTCATTTAGAATTATTTAATTGTTGGCTTAAACCTCCATCTACATTTAAAGGCTTCAAGAACTTAAAGAGTCTTGATCTGCAACATGTTACCTTGGCTCAGGATGTTTTTGAAAACTTGATATCCAGCTGCCCAGTGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTCACCCATCTTAATATTGATGCACCGAATCTCCTGTTTTTTGACATTGGGGGTAAATTTGAAGATATTAGCTTTGAGAACACTTTCCAATTAGCTGTGGTATCCATTGGTTTGTATGTGAACTTTGAAATCAATCAAAGTAGATTTCGTGGAGGCTCTAGCAATTTGCTCAAATTTTTTGTTCATCTGCCACACGTGCAAAGGCTAGAGGTTCAAAGCTATTTTTTAAAGTATTTGGCAGTGGGGGTTGTGCCAATAAGTCTTCCAAGACCGTGCTTTGATCTCAGTTATCTTTCCATACGAATAAACTTTAATGATTTGAAGGAAATCTCAGCTGCCCTTTGCCTCTTAAGAAGCTCACCTAATCTACAAGAACTAGAAATATTGGCTCGACCAGAGGAGCAGACTGTTATGATAGCGCACACCTATTGTTGGGAAGAGGTATATTTTGCTTGTCCAGACATGCATCTGCGAAATGTGAAGATAGATGGCATATCTGGTATCAAACCTGAATTAGATTTTATCAACTTTCTACTTCTATACTCTCCAGTGCTGGAAAGGATGACTGTGAAGCCTGTTTCAAACATCGGAACAGAACTGATGAAAGAACTGTTGCGGTTTAGGAGAACCTCAAGACAAGCTGAAATTATTTACCTGGACACTTAG 1281 0.4012 MGRELPQSPCLTDLEPDRISYLPGHVIDQILSHLSIKEAVRTSVLSSKWRYRWATLPNLVFDNQCLSVAAQDHVTIKNKLLRTVDHVLLLHSGSINKFKLSHRDLLGVADIDRWTLHLCRKSIKEFVLEIWKGQRYKIHSCLFCCQSLTHLELFNCWLKPPSTFKGFKNLKSLDLQHVTLAQDVFENLISSCPVLERLTLMNFDGFTHLNIDAPNLLFFDIGGKFEDISFENTFQLAVVSIGLYVNFEINQSRFRGGSSNLLKFFVHLPHVQRLEVQSYFLKYLAVGVVPISLPRPCFDLSYLSIRINFNDLKEISAALCLLRSSPNLQELEILARPEEQTVMIAHTYCWEEVYFACPDMHLRNVKIDGISGIKPELDFINFLLLYSPVLERMTVKPVSNIGTELMKELLRFRRTSRQAEIIYLDT* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00924 426 Pfam FBD 357 395 IPR006566 -
Lapu8g00924 426 Gene3D Ribonuclease Inhibitor 81 426 IPR032675 -
Lapu8g00924 426 PANTHER F-BOX PROTEIN-LIKE 17 400 - -
Lapu8g00924 426 SUPERFAMILY F-box domain 15 92 IPR036047 GO:0005515
Lapu8g00924 426 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
Lapu8g00924 426 Pfam F-box domain 20 51 IPR001810 GO:0005515
Lapu8g00924 426 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Lapu8g00924 426 SUPERFAMILY RNI-like 120 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00924 Lapu-Chr8 27438670 27442312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00924 17 216 EF-hand Containing Proteins AT5G41840 27.803 4.12e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00924 - - gmx:100782183 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00924 8 27438670 27442312 Lapu8g00924 8 27438670 27442312 ECH