Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00916 ATGCTGAGAGACGAAACTGTGGGTTCCAGAAGCGCCAGGCACAGCGCCGCCGCCACCGTCTCCAACAAGGTTCTCGTCGCGGTCAAGGCGGAGAAGGTGATCTCTAACACTGCATTAGCCTGGGCGCTCACTCATGTCGTTCACTCCAGCGACTCCATCACGTTGCTCGCCGTTTACTCTGCTCACAAAACCGGCAGAAGGTTCTGGCATTTCACGAGACTCGCCGGAGACTGTACGACCGGACCGGCGGGGAAGTTGCCGGAGCGAATTTCCGATATCTCCGAGTCTTGTGCCCAGATGGTGCTTCAGTTGCACAATCAAGTTGAGGTAAGGGTAAAGATTAAGGTGGTCACGGGTACTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCATGAGGCTTAACTTAGGGTGTTCCGATGAACTCCAAACTCCTTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGGTAAAAGGCAGAAGATTGAAGCATTGTACCCCACTAGGTAGCCCTGAAGAAGCAGGTACTTCTGTTACAAGAAATATAGGAGTAAATTCAGGGTCAAGTTCAGATTCGACGACTTCTCCTTTCCTTGTCTATGAACAGAACCCTCTGTACGAGGGTCAGGGTCCAGAGAAAAACATACACAAAGCAATCAACGAATCAAAAGCTTTCAATGTCCAACCACCATTATACTTTGATCTTGAAAGAGATGGCACTCCCCCTTCATGGCCACGTCAACCAGCATCAGTGGCTACTGAAAACAAGACTGTATTTTGGATTCCTCAAAACTACATTGCTGACGAGAAGTTTCAGAAAACTAAAAACAATACTATTATCCAAAGAACTAAATCTCCATCTTCGAAAACTTTACTCGAGAATTTTATACGTTGCGATCAAGAAATGAGAAGAAATGAATATGGGTTTGAACAAGATCAAAGTAGAAGTTATGTCCCCGACTCGGGCAACAGAGATAATTCCATACCTTTGGGTAGAACTACCTCAACACCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAACGAGCTAGAGGAAGCTACTGATATGTTCTCAGATGTAAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTTTGGGGGTTCTCAAGCAGATCTTGATTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGATTTTGTACAGAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGAGATGAGAGTATGCCTTTCGATTGGAACTCACGCTTAAAGATAGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCACGACTTTGAACCTCTGGTGGCCGATTTTGGGCTTGCTAGATGGCACTCAGAATGGAACATAGATACAGAAGATCGCGTTATAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGAAGCTGGAAACCTTACATATAAAGTAGATGTATATGCATTCGGAATTGTATTATTAGAGTTAATAACTGGTAGAAGAATTAGCGAGTTGAAACACTTCAATGGACTCTCGTATCTTTCTGAATTGTTTCACCCTCTACGCATGTTAGAGCACAGCCATATCTTACAAAATATTCGATGTCTCAAACCATGCTTCAACTCTGAGGAGTCATTGGAATTTAATCTTCAATTGCAAGCCATGGCACGAGCTGCTTCGTTGTGTCTCCGTGTGGATCCTGATGCCAGACCCCCAATGTCAAAGATCCTGAGAGTGCTGGAAGGGGGTGATCCAGTTCATCCTATGGGTTTAGACATCAATTCAGTTGGTAACACAAGCGGGCATTTGAGCGGTTTGAAGTCGCTCACTCCACCCGAAGGTACAATAAGTCATTCTCGTAGACTATCACATTGA 2199 0.4475 MLRDETVGSRSARHSAAATVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAHKTGRRFWHFTRLAGDCTTGPAGKLPERISDISESCAQMVLQLHNQVEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMNGSQAKIMRLNLGCSDELQTPFFSATSSPGIEIAKVKGRRLKHCTPLGSPEEAGTSVTRNIGVNSGSSSDSTTSPFLVYEQNPLYEGQGPEKNIHKAINESKAFNVQPPLYFDLERDGTPPSWPRQPASVATENKTVFWIPQNYIADEKFQKTKNNTIIQRTKSPSSKTLLENFIRCDQEMRRNEYGFEQDQSRSYVPDSGNRDNSIPLGRTTSTPPPLCSQCQNKAPVFGKPPKRFSYNELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTESNLRILVYEYICNGSLDLYLYGDESMPFDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNIDTEDRVIGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRISELKHFNGLSYLSELFHPLRMLEHSHILQNIRCLKPCFNSEESLEFNLQLQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVHPMGLDINSVGNTSGHLSGLKSLTPPEGTISHSRRLSH* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00916 732 ProSitePatterns Tyrosine protein kinases specific active-site signature. 531 543 IPR008266 GO:0004672|GO:0006468
Lapu8g00916 732 ProSiteProfiles Protein kinase domain profile. 410 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00916 732 Gene3D HUPs 8 174 IPR014729 -
Lapu8g00916 732 MobiDBLite consensus disorder prediction 348 379 - -
Lapu8g00916 732 SUPERFAMILY Protein kinase-like (PK-like) 390 688 IPR011009 -
Lapu8g00916 732 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 485 - -
Lapu8g00916 732 SMART tyrkin_6 410 688 IPR020635 GO:0004713|GO:0006468
Lapu8g00916 732 FunFam Os07g0541700 protein 486 574 - -
Lapu8g00916 732 MobiDBLite consensus disorder prediction 710 732 - -
Lapu8g00916 732 CDD STKc_IRAK 416 690 - -
Lapu8g00916 732 Pfam Protein tyrosine and serine/threonine kinase 416 686 IPR001245 GO:0004672|GO:0006468
Lapu8g00916 732 Gene3D Transferase(Phosphotransferase) domain 1 486 694 - -
Lapu8g00916 732 MobiDBLite consensus disorder prediction 351 379 - -
Lapu8g00916 732 PANTHER OS01G0750732 PROTEIN 150 692 - -
Lapu8g00916 732 Gene3D Phosphorylase Kinase; domain 1 379 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00916 Lapu-Chr8 27333509 27339847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00916 385 684 Trihelix Transcription Factor Family AT1G68690 45.545 5.93e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu8g00916 PK_Tyr_Ser-Thr 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00916 - - var:108323674 1307.74