Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00875 ATGTCTCCCTTTCGGTTATTGTGGGTACTACCAGTACTGCTTCTGTGGGTGTGGTCAGAAGCTATTGCTAGTGCAAATGATTATGAGATAAAAGGGAGCAACACGGAAGAGTGCTCAATATTGAAGTCCAAGATTGCAGTGAACATTGGAGCAGCCATAGATTTGAATTCTCGTATGGGAAAGGAGCAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAGAGTTGCTATGAGCTTGCCTTCATCTTCACTTATAACAGTCAGGGAAACCCATCATCTCCAACTGTGATGGCTGCAGATTTTGCAAACAGCAAACAAGTGGAAGTTGTCGTGGGAACAAAACTCGATGCAGCAACATTATTCCATTCGATTGATGAGAACTCAAAGGATATCCCCATCATATCTCTAACCTCAACAGCTAGTCCAGAAATAACTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGATGTCAGCATTCACATGCAATGCATTGCATCCATCATAAACCAGTTCCATTGGCGAAAGGTTACAGTAATTTACGAACACAACAACCTCTTTGCCTCTCATTCGGAGATATTGACTAGACTCTCTTACTCTCTACGTCTAGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCTTCAATGACCCTGCTTTCAAACCCAATTGAGAGCATAGAACAAGAGCTTATAAGGCTCAAGAACAAGAGCAATAGGGTGTTCTTGCTCATTCAATCTTCCTTGGAGTTTGCCACTTTGCTATTTGAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCTGATGATGTCGCTAACCACCTTGATTCATTTGATTCTTCTGTCACTTTCAACATGCAAGGCGTTATGGGGTGCAAAACCAACTTCATGGAAATGAGTCAAACGTTCAAACTTTTCAAGTTCATGTTTAGGAGAAAGTTTGTATTGAATTACCCTGAAGAAGAAAACTCTCAACCAAGTGTCTTTGCTCTTAGGGCTTATGATGCTGTTTGGACCATTGCTAATGCCTTGGAGAACTCACAAGGAAACTTTTCCTTATTAGAAAATATTTTACACAGTGATCACGAGGGCCTTAGTGGGAAGATAAGGTTCAAAGGCAGAATGTTATTGGAACCACCAACCTTTAAGATTGTCAATGTTATTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAACCTTGTACAGCATGAGGTGGTGAACACAACAAGTACTAGTGCTGGTTCTGCTAGAGTATTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCACTGAGGGAAAGCCATTGAAAATTGGGGTTCCCGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCCAATTCTCTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGAGATATCCAAGTGGTGGAACATAGATATGCATTTGCGGAATTCAGTCATCCATATGTTGAATCTGGCATAACCATGGTAGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGTTAATGGCCGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAACCAATTCGGAGCTGAAGAGTTTTGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTGTACACAGAGAACCTGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACAGCGAGCCTTTCGTCAATGATGACAGTGTCCCATCTTGAACCATCTGTGCCTGATATACAAACACTGCTGAGGACAAATGCAATCATAGGGTGCAATAAAAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCAACAGAATATCAGGGTATTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACCATTGCCCCTCATGCTGATGTCTTCCTAGCTACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCCTTTCCAAAAGGTTCAAGTTTAGCAATTGACATATCCCGAGCAACCTTAAAAGCCATAGAAAGTGGAGAAGTGAAAAAATTAGAAGAGAAAATGTTGTCTACAACTAATTGTGGATCTACAAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCTTATTTGGCATTTGTGGAACCATTGCTCTCATAGGTTTATTGGCAACCATTATTCACTTTGTTAAAAGGAATGCACAAACATTTATGAATTACATATTGTTGTTACAGTTACAAAGAGGATTACAAATAATCAAACTTCTTGCTCAAAATCATCTAAACAAGTACTCAAGGAGTGCACCAGCCCTAGATGCAAATAGTAGAGAGAATGTATCTCATAACAATGAGTTAGCTACAATAAGCATTGAGCTACCAATTAACTACCACACATGA 2730 0.4029 MSPFRLLWVLPVLLLWVWSEAIASANDYEIKGSNTEECSILKSKIAVNIGAAIDLNSRMGKEQKIAMEVAIEDVNRQSCYELAFIFTYNSQGNPSSPTVMAADFANSKQVEVVVGTKLDAATLFHSIDENSKDIPIISLTSTASPEITSIPLPHFIQMGHDVSIHMQCIASIINQFHWRKVTVIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVAFPSMTLLSNPIESIEQELIRLKNKSNRVFLLIQSSLEFATLLFEKAKQMGMMEKGSVWIIADDVANHLDSFDSSVTFNMQGVMGCKTNFMEMSQTFKLFKFMFRRKFVLNYPEEENSQPSVFALRAYDAVWTIANALENSQGNFSLLENILHSDHEGLSGKIRFKGRMLLEPPTFKIVNVIGKGYKELAYWSMESGLSENLVQHEVVNTTSTSAGSARVFLSSVDWPGGLKTVPKGWVYNSTEGKPLKIGVPAVDPCPQFVNVSHDKRLNETQFSGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGITMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGETNSELKSFGAILWFSVTTLFFVHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPSVPDIQTLLRTNAIIGCNKNTFLVHYLVDELKFQQQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVKKLEEKMLSTTNCGSTNNKIQNEQLGPQPFFGLFGICGTIALIGLLATIIHFVKRNAQTFMNYILLLQLQRGLQIIKLLAQNHLNKYSRSAPALDANSRENVSHNNELATISIELPINYHT* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00875 909 SUPERFAMILY Periplasmic binding protein-like II 443 794 - -
Lapu8g00875 909 Pfam Receptor family ligand binding region 64 398 IPR001828 -
Lapu8g00875 909 CDD PBP1_GABAb_receptor_plant 48 418 IPR044440 -
Lapu8g00875 909 Gene3D - 574 711 - -
Lapu8g00875 909 Gene3D - 458 573 - -
Lapu8g00875 909 PIRSF IGluLR_plant 4 361 IPR017103 -
Lapu8g00875 909 PIRSF IGluLR_plant 354 897 IPR017103 -
Lapu8g00875 909 FunFam Glutamate receptor 165 334 - -
Lapu8g00875 909 CDD GluR_Plant 462 796 - -
Lapu8g00875 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 869 IPR015683 -
Lapu8g00875 909 Pfam Bacterial extracellular solute-binding proteins, family 3 488 795 IPR001638 -
Lapu8g00875 909 SMART GluR_14 465 798 IPR001320 GO:0015276|GO:0016020
Lapu8g00875 909 FunFam Glutamate receptor 575 708 - -
Lapu8g00875 909 SUPERFAMILY Periplasmic binding protein-like I 47 454 IPR028082 -
Lapu8g00875 909 Gene3D - 167 330 - -
Lapu8g00875 909 Pfam Ligand-gated ion channel 796 826 IPR001320 GO:0015276|GO:0016020
Lapu8g00875 909 Gene3D - 41 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00875 Lapu-Chr8 26959871 26964550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00875 47 842 Ion Channels AT2G17260 30.271 5.45e-115 372