Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00870 ATGGCTCTTCTACTTGACAACTGTGAGAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTCGACGACCCCTCCACCGACCACATAGTCTCCTGGGGCGAAGACGACGCCACCTTTGTAGTTTGGCGCCCCCCAGAGTTTGCTAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTTTCTAGCTTTGTGCGTCAACTCAACACCTATGGTTTCAGAAAAATTGTGCCTGATAGATGGGAGTTCGCAAATGAGTTCTTCAAGAAAGGAGAGAAGCACTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGAATCAGCAGCAAGTGCAAGGCATGCACCATAATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAATAGACTCAGCGTGTCCCCTCCCCATGACACGGACGAGTTAGCCAATTGGTGCGACTCACCCCCAAGAGGAGTTGCAAGTGGAAACAACATCATCAACAACAGCAACAGCTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAGCCCGTGGCTCCAAGCAACCCTTACCCTTCTCTTCTACTATGCAGTAACAACAACAAATCATCACAATCCTCTCACATAAATACTGTTTCAACAGTTCAGAGACCGGTGAAACAGTTTGTGGGGTGTTATTCCAACAACACCAAGCAAGCGCGTGCCGTGAACTCTCCCACTAATAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAACTGCAAGACCAAGCTCTTCGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAAGTTCAGAAACAAATAAAGCGCGTTTGGTGGTGGAAAATGATGAATTGTTTGGCTTGAATCTCATGCCCCCTTCAACTTGTTAG 1050 0.4667 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHQQNQQQVQGMHHNQFGLNVPPFFPFHNRLSVSPPHDTDELANWCDSPPRGVASGNNIINNSNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNPYPSLLLCSNNNKSSQSSHINTVSTVQRPVKQFVGCYSNNTKQARAVNSPTNSSITIVEEEPSSNNCKTKLFGVSLQSKKRVHPEYGSNNLQSSETNKARLVVENDELFGLNLMPPSTC* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00870 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 280 IPR027725 -
Lapu8g00870 349 Coils Coil 184 204 - -
Lapu8g00870 349 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g00870 349 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g00870 349 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g00870 349 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g00870 349 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g00870 349 FunFam Heat stress transcription factor B-4 17 115 - -
Lapu8g00870 349 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lapu8g00870 349 Gene3D - 17 116 IPR036388 -
Lapu8g00870 349 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00870 Lapu-Chr8 26919958 26922210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00870 1 348 HSF AT1G46264 56.032 7.10e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu8g00870 HSF_DNA-bind 4.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00870 K09419 - gmx:100782841 592.808