Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00867 ATGGCTGGTGACATGCACCAACCACAACCCTCTCTTGGGAGAACCTTCCCTGCTAATTCAGAAGACTTCTCAACCTTCTTCAATCAATTCCTCCACAACCCTCCCCCACTGGGAATGGATTCTAATCATTCTGCTTCTCATCTCACCCCTAACAACAACACCAACAACCCTGTTCCTTCCTCTCCCTCAACTTTCCATTTCTCTCACCCCCATCACTGCATCCCTGCCACTGATGCCAACACCTTCAAACAACACAACAATAATCACCCCTCTGATTTCACTTCTTCTGCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCGATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTGATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTATGATAATGCCACAGACTGGGTTGAACCTTGATGAGAATGATGGACTTCAGAATTCTACTAGTGCAATTGCATCCTCTTCAAATGAAGAAAGCTTGGTGCGGCATGCGTTTAGTTTTCCGAAACAATGCTGCATCTCAAATCAGGCTGTTGTTGTACCCTCAGTGACAAAATCAGCTACTTCGAATGCCCCATCCACTTTTTATCCTTCTATTAAGTACTTTATTGTTTTGATATATGTTGAGCTTAATAACTCTTTGTGCAACATGAAGGATACACTCTACGACAACATGCCCCAACTATTTATGGATGCACCAAAGATTGGAAAGGAACCTTCTTCAGACTTGTCTTAA 930 0.4269 MAGDMHQPQPSLGRTFPANSEDFSTFFNQFLHNPPPLGMDSNHSASHLTPNNNTNNPVPSSPSTFHFSHPHHCIPATDANTFKQHNNNHPSDFTSSAEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPMIMPQTGLNLDENDGLQNSTSAIASSSNEESLVRHAFSFPKQCCISNQAVVVPSVTKSATSNAPSTFYPSIKYFIVLIYVELNNSLCNMKDTLYDNMPQLFMDAPKIGKEPSSDLS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00867 309 MobiDBLite consensus disorder prediction 27 133 - -
Lapu8g00867 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 178 IPR036638 GO:0046983
Lapu8g00867 309 Gene3D - 113 177 IPR036638 GO:0046983
Lapu8g00867 309 SMART finulus 124 173 IPR011598 GO:0046983
Lapu8g00867 309 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 255 IPR031066 -
Lapu8g00867 309 MobiDBLite consensus disorder prediction 116 133 - -
Lapu8g00867 309 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Lapu8g00867 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Lapu8g00867 309 CDD bHLH_AtPIF_like 118 180 IPR047265 -
Lapu8g00867 309 FunFam Basic helix-loop-helix transcription factor 113 176 - -
Lapu8g00867 309 MobiDBLite consensus disorder prediction 79 101 - -
Lapu8g00867 309 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00867 Lapu-Chr8 26888479 26891963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00867 118 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 70.000 8.84e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g00867 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00867 - - gmx:100785332 381.719