Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00866 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCAAGAAACAATAGAATTTGATACATCAAGTACTGCTACAGTTGATCAACATATTTTCTGGAATAATATGCGTAATCCCGCAGAAAATCATTTTGCACTTCCCCCCAGTGATTTGAACCCGTCATATGCGAATCCTATAAACCATGAATGGCAGAACCTTAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACTCAGAATGAGGTTACCAACAATGAGCAGAAAGGAGAGCTAGGACTATCATCTTCAATAAGTTCTGGTGCTATAGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCGAACAATACTTTCTCGTTGGACAATGTCAATACAAGTCCCATGTTTATGCGCAGCTCCAATTCTCACTTAGTGCCGCAGAATCTCAACCTAAATGCAAGTTTAGCAGATAGTAGCACTGATAATAGCTATCGTGTGGAACATCCTCCTACCTTGAACAAGTCTAGTGGACCGGTAAATGAGCATATTCCACCTTCAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTAGTTGAGGATACTGATGGTAGGCCTGGTTGTTCTCTAGACACTCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGAACTGTTGGGCAATCTTCGGGTGGTGGAAGTTCCAGCTATAGTCAGCATACAGATGGTAGTACTTGGAACACTCTTCCTACTCAGGATTATGGGGGGAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTAAATGCGAGACTCGGCCTGAGTACTGGGGATGGAGCCTCTGAGAGCATTCCTTGGTCAAATGTTGCTGGAAGCTCGGAAAGCTTCCACAGAAATTTTCGAGTGAGGATAAACCCTTCAAGTCAACAAATTTCCGTTCCTCCCCCTGTTATCTCAAGTGGGAGTGTTATTAGGAATTCTGGTGTTTCTTCGTCCTCTCCAATGTTGCAACGGTTTCATCCTGTTGATAATTCTTTGGACTTGAGGTCAGCACCACCTGTTGATACTATGGTTCCTCAAAGCCAGCCCCTTGTAATTCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAACAAACAATCATCCATCAAACTCAGTTATATGTGCAGATAGAAATAATTTACCAAACGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTGTTGAATACCCGATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGAAATCCAGCTAGAGCTTCAAATGGTGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCAGCTGTCAATCCACCATCTGCCCCGGCATGGGTTTCTCGACCTAATCCTCAGCAGTATCCTCGCAGGTTATCTGAATATGTTCGTAGGTCCTTGTTTTCTCCTGGTTTAGAAGCTGCTGGAAGTTCAAGCAACAGTTATGCTTCCTTCCGTGGTCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAGGGTGATAGTGAATATGGAATTCAGTATTCATTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCTGAGGTATGTATAATGTATTCGACTCTTCTCTTGCATATCAATATTATTATTATTACCATTGCAGTTTTAACTGCTGGAAAAAAATGTTTCTTTATCATGTGGCTTAGATGTATGGAGGCATATCTCCGCAATGTATTGGGCCTCATGCGCAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTCGATCATTCAGTGTTTGCTGGAATTGCTGCTGATATTCATGACAGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGCTTGAGTGAGGAGAACATATTGAAACACATGAAAAAGAAGAAGTATTCAGCTGAACCAGGTTCTCAGAATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAGCAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACGTGA 2187 0.4298 MQGQRGTIGSLQETIEFDTSSTATVDQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIGPRLEERRFEPNNTFSLDNVNTSPMFMRSSNSHLVPQNLNLNASLADSSTDNSYRVEHPPTLNKSSGPVNEHIPPSIGSGPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERTVGQSSGGGSSSYSQHTDGSTWNTLPTQDYGGSSFNRSASTEQVNARLGLSTGDGASESIPWSNVAGSSESFHRNFRVRINPSSQQISVPPPVISSGSVIRNSGVSSSSPMLQRFHPVDNSLDLRSAPPVDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSTNNHPSNSVICADRNNLPNEEASSRSMPRNIVEYPMFVPATNLRNVVRNPARASNGANLSIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNSYASFRGPSTSSGVNPFERQGDSEYGIQYSLRSLAAGGEGSSRLVSEVCIMYSTLLLHINIIIITIAVLTAGKKCFFIMWLRCMEAYLRNVLGLMRRGGNLRFEDVMILDHSVFAGIAADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEENILKHMKKKKYSAEPGSQNEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00866 728 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 208 726 IPR045191 GO:0061630
Lapu8g00866 728 MobiDBLite consensus disorder prediction 375 394 - -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 434 462 - -
Lapu8g00866 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 725 IPR013083 -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 434 472 - -
Lapu8g00866 728 Pfam Ring finger domain 681 722 IPR001841 -
Lapu8g00866 728 FunFam E3 ubiquitin-protein ligase MBR2 649 726 - -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 215 257 - -
Lapu8g00866 728 SUPERFAMILY RING/U-box 680 724 - -
Lapu8g00866 728 ProSiteProfiles Zinc finger RING-type profile. 681 722 IPR001841 -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 64 99 - -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 492 517 - -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 146 171 - -
Lapu8g00866 728 MobiDBLite consensus disorder prediction 222 257 - -
Lapu8g00866 728 SMART ring_2 681 721 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00866 Lapu-Chr8 26875385 26881486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00866 1 728 C3H Transcription Factor Family AT2G15530 32.656 3.94e-79 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00866 - - lja:Lj0g3v0173889.1 935.25