Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00862 ATGGTAGTTAATTTAATCATGGAGGATAGGGATCACTGTTGTTCCAACGATTCAACGATCACGAACAGAAGAAGAAGAAGAAGCAGGAGCCCGATAACAACCTTGGAGAAATCGAACAAGCAACACCGCGAGAAACCGATGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCAAGGATTTGGTTGGGTTCTTATACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTCCGAGGTCCCTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGGGCTAATGATGACGATTCCGTGAACATGTCGGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTGCAAACCGCGCTTCACCATCACGCGCCCTCGCACAACCCCATTCCAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGA 534 0.5356 MVVNLIMEDRDHCCSNDSTITNRRRRRSRSPITTLEKSNKQHREKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANDDDSVNMSADSIRRKATQVGARVDALQTALHHHAPSHNPIPISLKPDLNEFPKLEDLQD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00862 177 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Lapu8g00862 177 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Lapu8g00862 177 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Lapu8g00862 177 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 PRINTS Ethylene responsive element binding protein signature 88 108 IPR001471 GO:0003700|GO:0006355
Lapu8g00862 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 34 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00862 Lapu-Chr8 26821899 26822840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00862 48 151 AP2-EREBP Transcription Factor Family AT5G67190 70.370 1.80e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu8g00862 AP2 3.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00862 K09286 - gmx:547642 252.677