Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00793 ATGAGTTTTCATGATACACCAAACACAGGACTTGGTCTTGGTCTTGGCCTTGGTCTTGTTACCTTCCATGATCAATCAGAGAATAGCTTGAAGAGTGATGACGACCCCTTGAGAGAAAGCCACAAGATCAAAAGGGTGGAGACTCCATCAAAATGTAACAAAACATACCCTTCGCTTACATTAGGACCACCAGATGATGATGATGATGATGATGAAGTGAAAAATGATCAACCAAGTTCAAAGACTGAGTCCTATGAATATTTTCGGCCTCAAGTTTCTTCTCCTAGTGTGGTGTCTTCATTTTCTAACTCCTCTAGCATCAAGAGGGAGCGAGATCAAGCCTTGGGAGAGGAATTTGAGGTAGAAGTAGAGAAAGTTCCAACAAGGGTAGGCGATGTTGATGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCTGCAATCTTGGAGGAAAACTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACGAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAACAAACTGAATCAGATTGTGATCTATTAAAGAAGTGTTGTGACAGTCTAACAGAAGAAAACAAGAGGCTGCAAAAGGAGCTTCAAGAACTGAAGTCAATGCCAGTGCCTCTATACATGCAGATTCCAGCAGCCACACTTTCCCTGTGCCCTTCTTGTGAGAGAATTTGTGGTAGCAAAAGTGATGATGAGAATGGCAACAACAATAGTTCTTCATTGCTCATTGCTTCAAAAACACATCATCATCATCACTTTTACAAAACCAACTATCCCTTCTCCCACTCTTCATCTGCAGCATGCTAG 888 0.4189 MSFHDTPNTGLGLGLGLGLVTFHDQSENSLKSDDDPLRESHKIKRVETPSKCNKTYPSLTLGPPDDDDDDDEVKNDQPSSKTESYEYFRPQVSSPSVVSSFSNSSSIKRERDQALGEEFEVEVEKVPTRVGDVDEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDSLTEENKRLQKELQELKSMPVPLYMQIPAATLSLCPSCERICGSKSDDENGNNNSSSLLIASKTHHHHHFYKTNYPFSHSSSAAC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00793 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 266 - -
Lapu8g00793 295 Pfam Homeobox associated leucine zipper 196 229 IPR003106 GO:0006355|GO:0043565
Lapu8g00793 295 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Lapu8g00793 295 CDD homeodomain 139 197 IPR001356 GO:0003677
Lapu8g00793 295 MobiDBLite consensus disorder prediction 27 49 - -
Lapu8g00793 295 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Lapu8g00793 295 MobiDBLite consensus disorder prediction 80 104 - -
Lapu8g00793 295 Gene3D - 132 202 - -
Lapu8g00793 295 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Lapu8g00793 295 Coils Coil 195 229 - -
Lapu8g00793 295 SUPERFAMILY Homeodomain-like 135 197 IPR009057 -
Lapu8g00793 295 MobiDBLite consensus disorder prediction 27 104 - -
Lapu8g00793 295 SMART halz 196 237 IPR003106 GO:0006355|GO:0043565
Lapu8g00793 295 SMART HOX_1 138 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00793 Lapu-Chr8 26027577 26030504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00793 1 251 Homeobox Transcription Factor Family AT4G37790 47.148 5.24e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu8g00793 Homeodomain 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00793 K09338 - gmx:100807072 448.743