Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00789 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAGAGAGGACCATGGTCCCCAGAAGAAGATGCAACACTCAAAGGCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAACCTCTATGGCCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGAAAAGTTAGCATCAAAACATTGACTGACAGTGACACTCTTCCTTCAACTTCAACTCCATTACCAACCAACCAAATTCTCAAAACTAAAAATCCACCTTTCAATGCTTCACCAAATTATCAAACTTCACTGCCCTTGGTGCTGCCAGTGTTAGATGCTAATGATAACAAACCATTCACCATTAATCAAAAAAACATCATTAGTTTTGACCAAACCAATCATCAAGGGTTGTATTCTCCGCAAGTCATGCATGGTGTCTCAAAAATTGGTGCAAGTTCAAGGATCAACAACAACACCAATGATGATAATGATAACGTTAACATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCAATTGCAATGAATTACAACAAGTGTGTTGTGTCACAGCCTCAACAACAACAACAGCAACAACATGGTTGTGATGAATCTATGGACATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGTCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAGATGTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 945 0.4169 MGRAPCCDKANVKRGPWSPEEDATLKGYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVSIKTLTDSDTLPSTSTPLPTNQILKTKNPPFNASPNYQTSLPLVLPVLDANDNKPFTINQKNIISFDQTNHQGLYSPQVMHGVSKIGASSRINNNTNDDNDNVNMVSLSQEGSSSISDSSSIAMNYNKCVVSQPQQQQQQQHGCDESMDMLMDFGFGFPYDFVNGPNCHYERVGEMFAPEWVDFSYADIKPH* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00789 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lapu8g00789 314 FunFam Transcription factor RAX3 70 136 - -
Lapu8g00789 314 SMART sant 13 64 IPR001005 -
Lapu8g00789 314 SMART sant 67 115 IPR001005 -
Lapu8g00789 314 CDD SANT 71 113 IPR001005 -
Lapu8g00789 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu8g00789 314 FunFam Transcription factor RAX3 7 68 - -
Lapu8g00789 314 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu8g00789 314 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu8g00789 314 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu8g00789 314 PANTHER OS09G0431300 PROTEIN 1 263 - -
Lapu8g00789 314 CDD SANT 16 62 IPR001005 -
Lapu8g00789 314 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lapu8g00789 314 Gene3D - 70 133 - -
Lapu8g00789 314 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu8g00789 314 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00789 Lapu-Chr8 25941799 25944710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00789 1 118 MYB Transcription Factor Family AT5G65790 83.051 3.16e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g00789 Myb_DNA-binding 8.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00789 K09422 - gmx:100789985 438.728