Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00753 ATGTCCAATTTGACTTCTGCATCCAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAATGGTTTTCTCCATGCTCACCAATATTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTCCCAGGCCACCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCACAGACCCTATTGGCAACAAACAGGTTCGTTTGTGAGATTTGTCAGAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCATAGAAGAGGACACAATTTGCCATGGAAGCTAAAGAAGAAGAGCAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGAGACCTCACTGGAATCAAGAAGCACTTCTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATCTGTGGCACTAGGGAATACAAATGTGACTGTGGTACCCTCTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTGGTAGAGCAGTGAACCCTCACTCTCTATTATCTTCTCACTCCCAATTTCGAAGCCATGGTCTTCAACTTCAAGCACCATCATCACTAGTAATGAAAAGAGAACAAGAGTTCAACCTAATAGGTCAAGAAATTCCACCATGGTTAACTTCTCCAACAGTGTTAGAAGAATCACTGCACAGTCAAACACTAAGAACCACCTTAGACTTCTCCACACCACAGTTATTTCCCACACATGTCAACCACTCTATATTCCACCATGATCAAAACCCTAGCCCTACTTCTACAACAACAGGTTCAACAACCACTTTTCTTCCTTCTTTGAGCTCCTTCCACTATTCCACCACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAGGCCTCACAAATAGGCGTAACAGTAAGTGCAGCAGCACCTTCACAAGCGATGATAGTGAGACCCCACTTGTTGCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACTACTACTACAACAGGGTATAGTAATATGGCTTCATCTTCAGCCGTTTCTGGATTGGTTATGGCTATGTCCTCACGTGAAGAAATAGGGACTCATGGATTTGCTCGTGGCTTGGCATCTTGA 1212 0.4398 MSNLTSASSEISASSGIRNDNGFLHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPQTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKSSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSHSQFRSHGLQLQAPSSLVMKREQEFNLIGQEIPPWLTSPTVLEESLHSQTLRTTLDFSTPQLFPTHVNHSIFHHDQNPSPTSTTTGSTTTFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAAAPSQAMIVRPHLLLQQVHVPECTTTTTTTGYSNMASSSAVSGLVMAMSSREEIGTHGFARGLAS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00753 403 SMART c2h2final6 70 92 IPR013087 -
Lapu8g00753 403 SMART c2h2final6 111 141 IPR013087 -
Lapu8g00753 403 SMART c2h2final6 146 166 IPR013087 -
Lapu8g00753 403 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lapu8g00753 403 Gene3D Classic Zinc Finger 70 115 - -
Lapu8g00753 403 FunFam protein indeterminate-domain 12-like 49 117 - -
Lapu8g00753 403 Gene3D Classic Zinc Finger 124 204 - -
Lapu8g00753 403 MobiDBLite consensus disorder prediction 31 54 - -
Lapu8g00753 403 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Lapu8g00753 403 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 360 IPR031140 -
Lapu8g00753 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Lapu8g00753 403 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00753 Lapu-Chr8 25573237 25578292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00753 31 340 IDZ Gene Family AT3G50700 54.491 9.16e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g00753 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00753 K25870 - gmx:100783557 572.778