Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00730 ATGGGGTGGGGTCACCTCGGGAGGCATGGCTCAGATTCCGGCGACAGCACGGAGGCTGGTCCGAGCACCTCCGCCACCGAGCCACGGCGGTTCCCACTGGCGGCTCAGCCAGAAATGATGCGCGCCGCCGAGAAGGACGATCAATACGCCTCTTTCGTCTACGAAGCCTGTCGCGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCGGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTCACAACTGGCTCGGGACAACAAACCCTTGGAGAAGAATACTGCGACATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACTGCTATTCCATATATGGCAGAACGGATTAGTTCTAGAATTGCTTCACGGGGCATTGTCCTGGCTGACTCAGAGTCTGCCGAAGGTTTTGGAGAAAATGGCCACAGGAGCCCTGGTTCTCGGATTTCTGGCACTGGTCCTTTATCCTCTTTGGGACAATCTGTCACAACTCTGTCAAGGTTGAAGCGGAAACTGAGTGCCTTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTCGTTCGTGAATTATTGCAGTTGGCTCTTCGTGCTAACCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCTGGTATTCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATATTAGGAGTATTTTTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGGCTCCGCCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGCATCCCATGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTACTCTGGCAACTCCAGATATTGTCAGAGGAAGTTGGGTCTCTGATTCTTCAACTTCTGAGCTTCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCTGAGTGCCCTCTTTGCCGCGCCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1185 0.4878 MGWGHLGRHGSDSGDSTEAGPSTSATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQTAIPYMAERISSRIASRGIVLADSESAEGFGENGHRSPGSRISGTGPLSSLGQSVTTLSRLKRKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAGSVHQASFASHDRSAGHGLPVLNEEGTLATPDIVRGSWVSDSSTSELHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRAPITHSSLVCVYHSDF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00730 394 SUPERFAMILY RING/U-box 339 383 - -
Lapu8g00730 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 391 IPR013083 -
Lapu8g00730 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Lapu8g00730 394 FunFam Peroxisome biogenesis factor 10 315 391 - -
Lapu8g00730 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Lapu8g00730 394 CDD RING-HC_PEX10 338 389 - -
Lapu8g00730 394 MobiDBLite consensus disorder prediction 1 32 - -
Lapu8g00730 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 392 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Lapu8g00730 394 MobiDBLite consensus disorder prediction 157 176 - -
Lapu8g00730 394 SMART ring_2 340 377 IPR001841 -
Lapu8g00730 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Lapu8g00730 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00730 Lapu-Chr8 25286996 25291173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00730 324 390 C3H Transcription Factor Family AT4G28270 30.120 2.11e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00730 K13346 - gmx:100783914 739.184