Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00727 ATGTACAAGAAAAGAATGGAAAGAAGAGAAGAGAAGTTGAGATATTGTCTTGAGATAGCACAAGAAAATGGAATATTGGATCTCATTCTCAACTGCAATGGTGAATTTCAACAATCTCCACTCTCTCTTCACTCCAATAGCAGCCCTCAAAGTCCCACTTCTCCACCACACCATGCTCACCACCCCACTCTAACACCCATCATTCATCAAGCTAAAATCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAGAAAATTGGGGAAGGAAGCACAGCGGAGATTCACAGAGGAACTTGGCGTGGATTTGAGGTCGCAGTGAAGTGCATATCGCAAGATTTTTTCCGCACAAACGAAAACGGCGTCGTTTACTTCTCCCAGGAACTCGAAACGCTGTCGCGGCAGCGCCACCGGTTCGTTCTTCAGCTCATGGGCGCGTGCATCGACCCTCCCCGGCACGCCTGGGTGGTCACCGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGGCCTGGGAACCGACGCAGGGAGCGGATGGTGCCACTCCCACCCTTGCAAGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCCATGCAGTACTTGCACGAGCAAAAGCCCAAACTCGTTCACCGCGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCATGCACGTTAGAGTCGCGGATTTTGGCCACGCGCGCTTCTTGGGTGATGAAGAAATGGCTCTCACTGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATTCGAAGTGAACCTTACAATGAAAATTGTGATGTGTACAGTTTTGGGATCATACTGAACGAGTTACTAACTGGAAATTACCCCTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAAGTGGGAGAACTTACTGACCTTATCTCTCTTTGTTGGGACCAAAATCCAACTACTCGACCATCCTTTGCTACAATCACCCTTTGTCTCAAAACTTATGTCAAGAACAATCTCATTTAA 1083 0.4783 MYKKRMERREEKLRYCLEIAQENGILDLILNCNGEFQQSPLSLHSNSSPQSPTSPPHHAHHPTLTPIIHQAKINGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISQDFFRTNENGVVYFSQELETLSRQRHRFVLQLMGACIDPPRHAWVVTEYLSTTLKEWLHGPGNRRRERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDAMHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRSEPYNENCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKVGELTDLISLCWDQNPTTRPSFATITLCLKTYVKNNLI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00727 360 ProSiteProfiles Protein kinase domain profile. 83 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00727 360 Pfam Protein kinase domain 85 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00727 360 SMART serkin_6 83 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00727 360 MobiDBLite consensus disorder prediction 40 62 - -
Lapu8g00727 360 Gene3D Phosphorylase Kinase; domain 1 71 163 - -
Lapu8g00727 360 ProSitePatterns Protein kinases ATP-binding region signature. 89 110 IPR017441 GO:0005524
Lapu8g00727 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Lapu8g00727 360 Gene3D Transferase(Phosphotransferase) domain 1 185 359 - -
Lapu8g00727 360 MobiDBLite consensus disorder prediction 40 58 - -
Lapu8g00727 360 SUPERFAMILY Protein kinase-like (PK-like) 47 347 IPR011009 -
Lapu8g00727 360 CDD STKc_MAP3K-like 89 348 - -
Lapu8g00727 360 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00727 Lapu-Chr8 25254175 25256242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00727 76 356 MAP Kinase Kinase Kinase AT2G17700 38.298 3.07e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Lapu8g00727 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00727 - - pvu:PHAVU_001G0393001 623.624