Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00677 ATGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAGTGGGTGTCTGAAATCAGGCTTCCAAATAGCCGTGAGCGTATATGGTTGGGGTCCTATGACACGCAAGAGAAGGCTGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCCAGTTTCAACTTCCCTGACACACCTCACCACCTGGAAATCGACTCTGTCAAGATACCATGCAGCCACCAAGAGATCCAAGAGGTTGCAGCAAAGTTTGCCAACAAGGTGGGAATGATGATTTTGCCAGAAGAAGAAGAAGAAGATGATGATGGAGAACTTGGAACTCAGAGTGAGTCTAAGTCTAACGACACCACACACACAAACACAAACACGACCTTTCCTATTTATGATGGTGGGACAAACAATCATGTGCAAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATTGCTCGGATTTTGGCCTCTATTTTGGAGCTGAGAAGGGTGAGTTTTTGTGCCCCACAACACAATCTCCACTACTCTTTCACAATGGGGATGAGATTGAAGTTGATCATGATCATGATCACGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 633 0.4518 MYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKGASFNFPDTPHHLEIDSVKIPCSHQEIQEVAAKFANKVGMMILPEEEEEDDDGELGTQSESKSNDTTHTNTNTTFPIYDGGTNNHVQVDQDTMDWTFMNMLDDLNCSDFGLYFGAEKGEFLCPTTQSPLLFHNGDEIEVDHDHDHDAFSNHSFLWSWNF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00677 210 SMART rav1_2 1 64 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 CDD AP2 2 60 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 MobiDBLite consensus disorder prediction 110 133 - -
Lapu8g00677 210 Pfam AP2 domain 2 50 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 205 - -
Lapu8g00677 210 Gene3D AP2/ERF domain 1 59 IPR036955 GO:0003700|GO:0006355
Lapu8g00677 210 FunFam Ethylene-responsive transcription factor 2 1 59 - -
Lapu8g00677 210 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700|GO:0006355
Lapu8g00677 210 SUPERFAMILY DNA-binding domain 2 59 IPR016177 GO:0003677
Lapu8g00677 210 MobiDBLite consensus disorder prediction 98 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00677 Lapu-Chr8 24706846 24707478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00677 2 118 AP2-EREBP Transcription Factor Family AT1G19210 60.684 8.68e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g00677 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00677 - - vum:124843463 364.385