Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00672 ATGAGTACTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAAGTTGTTACAAGGTTAAGTGCCCCTTGGAGGAGTCAGAGAAACAGGTTTTGAAACAAGGGTCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGACCATTGAGGATATTTCAATTTCCTTTGCTGGCTCCAAACTTTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTATACAAGGGTTTTGTGGATGACAAACTTAGGCCAGGTTTGAAAGCTCAGACTGTTGCTGTGAAAAGGTTGAACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTATTGTTATGAGGATGAACACAGGCTTTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGTGCTGCCAAAGGTCTGGCCTTCCTTCATGAAGCAGATAAACCTGTAATATACCGAGATTTCAAAGCTTCAAACATTTTACTAGACTCAGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGACCTGAAGGGGAAGACACATATGTAACAACACGCATAATGGGAACACAAGGATATGCTGCTCCTGAGTACATGATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTAACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGCAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAAGTTTATAGTATCATAGATTGTAGACTAGAAGGGCAATTTCCCATGAAAGGAGCCATGAAAATTGCTATGTTGGCTTATAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGGGTGATGTGGTGAAGGTGTTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCATTTGTGTATGTTGCCGTAAGTGAAAATGGTAACAAACATAAAATATAG 1161 0.4264 MSTKRNTWKSVILILSCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSTQTIEDISISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLNLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYMMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKVYSIIDCRLEGQFPMKGAMKIAMLAYKCLSPHPNARPTMGDVVKVLEPLQDFDDVFIGPFVYVAVSENGNKHKI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00672 386 PANTHER OS01G0588500 PROTEIN-RELATED 48 362 - -
Lapu8g00672 386 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Lapu8g00672 386 ProSiteProfiles Protein kinase domain profile. 81 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g00672 386 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Lapu8g00672 386 CDD STKc_IRAK 87 361 - -
Lapu8g00672 386 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Lapu8g00672 386 SUPERFAMILY Protein kinase-like (PK-like) 56 359 IPR011009 -
Lapu8g00672 386 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
Lapu8g00672 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lapu8g00672 386 FunFam Probable serine/threonine-protein kinase PBL8 164 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00672 Lapu-Chr8 24640679 24643173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00672 44 361 Receptor kinase-like Gene Family AT3G58690 48.148 3.13e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu8g00672 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00672 - - gmx:100802636 740.339