Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00669 ATGTCATCGGTGTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTAGTGAGCACCACGCGTGGGCCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACAACACCATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGCTGGCGACCCCACCGCCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCAATGGCAAATGCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTAGACCGATGTGACTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACCGATAAAAATGACCGGCCTTTAGATCCGCCAAAGATTTTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCAGACTGAAGCTAGAGCTGATGCAGAAAGTAAAGAGCCGAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCGTTGGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACTCCTGATAGTGAACTGAGTTCATCAAGAAGAGATCTGCAGTTATCTGTTAGGGATGCACTTAACTCAAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTAGTAACATGGCTCGTCTTGACTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTAAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCGAAGCCTAAGTTGCAAAAAGCAGGAGGAAGGTCCATTCCTGAGAATCATGATACGTCAGCACCCAGGTCCAATTCTGTCAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCGTGAAGAAAAAGGGAGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCTGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTACAAGGGCGTGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAATTCTTTAGCAGCAAAGGAGACACCCGCAGCTCCTGAAACTGGAGATGTTAATAATGAGGAGTTGTCTGACTGGAGAGGTGTTGGTTTGAAATTTACCCCGGAGTCCGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGGAAAGAGAAGTTCAATAGGATGATAGCCAAACAGAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1482 0.4487 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQAGDPTASGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSQTEARADAESKEPKKKGVKKLNLLSFGEEAEEEEKELALVKQKIKSSHDVLNDPRLLKEETPDSELSSSRRDLQLSVRDALNSKKEEPQKDSAPSNMARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQKAGGRSIPENHDTSAPRSNSVSVDEDQPKVEKLSVKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSLAAKETPAAPETGDVNNEELSDWRGVGLKFTPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGRSLT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00669 493 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 180 200 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 237 292 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 260 275 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 379 398 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 445 465 - -
Lapu8g00669 493 Coils Coil 206 226 - -
Lapu8g00669 493 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 CDD cyclophilin_CeCYP16-like 8 179 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 412 431 - -
Lapu8g00669 493 Gene3D - 2 182 IPR029000 -
Lapu8g00669 493 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Lapu8g00669 493 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Lapu8g00669 493 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Lapu8g00669 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Lapu8g00669 493 MobiDBLite consensus disorder prediction 342 368 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 437 465 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 304 373 - -
Lapu8g00669 493 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00669 Lapu-Chr8 24605835 24614605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00669 9 172 U-box Gene Family AT5G67530 46.341 1.12e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00669 K12737 - gmx:100793148 834.713