Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00661 ATGGCAAACTTCCACCGTAACAACGTTGAGCACGTGGTCCTCGGCCACCACCGTTCCAAGAGCACCTCCGTTGCCGGCGGCCACTTCCGCCTGTGGCACTCCCTCTCCACCGCCTCCTTCCGCCGCCTTGTCTTCGATGCCGTCAGCTGCGGCGCCAGCTCCCGTTACGCTGAGAGATCCGACACGTCCTCCGAGAGACACCATCACCAACCGAAACAGCAGCACCAGCACAAGACGAAGTCAAATAACGTGAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTTGCGGAGGTCGAAGCTGACGCGGAAACGAAGAAGAAAGAAGAGAAGCTTGAGGAGCTGAAGGGCCTAGTGAAGGAACTTCAGAAGGAAGATGAGGAAGAAAAAGAAGAAGTAGAAGAATCAATGAAGCGAAGGAGAGAAGCTGCTTCGAAAGTGAGGTTGCTAGCGAAAGAGGATTTGGAAGTTAGAGGAACGCTCGCGATGCTTGGAGCCATTCCTCCTCTCGTCGCAATGCTCGATGAATCCGAAAACGACGTCGATTCGCTCGTCGCTTCTCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGTGGCTGATTGAATCTCCAGAGGGTCTCGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTTCTTGGACTTAGTGCTTTGGATTCCAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGACTTTAGATAACAAGAGTAGTCCCCAAGCCAAGCAAGATGCTCTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGATTTGGTTCTGTTTCTTGTGAACTCGATAGGGGACATGGAGGTAACTGAAAGAGCCCTTGCAATTCTCTGCAACTTGGTGTCTACCCGAGAGGGTAGAAAGGCGACTAGTGCAGTGCAGGATTCGATTCCAATCCTGGTGGATGTGTTGAATTGGACAGACTCGCCAGAATGCCAGGAGAAGGCATCCTACATTTTGATGGTTATGGCACACAAGTCGTATGGAGACAAGCAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTGGCTCAGAAAAGGGCATCAAGGATACTTGAAATTTTGAGGGTGGACAAAGGGAAACAGATTTCTGGGAGCTATGGTTTGGGTGCTGCTGTCTCTGCCCCTATTTGCGGTTCTTCGTCCGGGAAGCCTGATGACGGAGGTGGAGAGTGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAACAATTAGTCCAGCAGAGTTTGCAGAACAACATGAGAAAAATTGTAAAAAGGGCCAATTTGCCTCACGATATTGTGCCATCTGATCATTTCAAGTCACTTACTTCAATCGCAGATCCAAATGGCGTGGAAGAAAGATTACAATTTAGATCTGATTGGGATGAAGAGCTGAGCTGTTCGTGGCAAATAAGTATGAAGGGGCATTTTGTTCCCATTATGTAA 1554 0.4891 MANFHRNNVEHVVLGHHRSKSTSVAGGHFRLWHSLSTASFRRLVFDAVSCGASSRYAERSDTSSERHHHQPKQQHQHKTKSNNVKSEKLSDLLNLAEVEADAETKKKEEKLEELKGLVKELQKEDEEEKEEVEESMKRRREAASKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESENDVDSLVASLYALLNLGIGNDAWLIESPEGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQTLDNKSSPQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDMEVTERALAILCNLVSTREGRKATSAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPICGSSSGKPDDGGGECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSIADPNGVEERLQFRSDWDEELSCSWQISMKGHFVPIM* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00661 517 SUPERFAMILY ARM repeat 114 391 IPR016024 -
Lapu8g00661 517 MobiDBLite consensus disorder prediction 57 88 - -
Lapu8g00661 517 Gene3D - 54 402 IPR011989 -
Lapu8g00661 517 SMART arm_5 153 195 IPR000225 GO:0005515
Lapu8g00661 517 SMART arm_5 271 309 IPR000225 GO:0005515
Lapu8g00661 517 SMART arm_5 226 270 IPR000225 GO:0005515
Lapu8g00661 517 SMART arm_5 313 352 IPR000225 GO:0005515
Lapu8g00661 517 Coils Coil 93 142 - -
Lapu8g00661 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 193 IPR000225 GO:0005515
Lapu8g00661 517 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 480 - -
Lapu8g00661 517 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00661 Lapu-Chr8 24512862 24516494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00661 133 396 U-box Gene Family AT1G67530 30.466 7.18e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00661 - - gmx:100788575 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00661 8 24512862 24516494 Lapu9g01935 9 34221487 34223434 PCT