Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00660 ATGAGAGCCACAGCAGCAGCGACAACACCATCAGTGATAACAGTCACAGAAACAAATGATATGAAGAACTCTAGATCTACAGCAGAAAGAGGTCCAAGGAGAAGAAGAGTGAGAAAGAGGTCTAGATCTACAGCAGAAAGAGGTCCAAGGAGAAGAAGAGTGAGAAAGAGTTCTCAGCAGCTCATCTTCACTCCATTCTCAACATTTGCTGTTCACTTTGCTACTGTAAGTGATGTTGTTTCTTTGTCTATTCTTTCGGAATTTCAGCTTGTGCTATACTTTTCAATACCACTGCTGTTGATGCTTTATGAATTCTTCTGTGTTCTTGAAAACATGATTATGGAACCGTGCATGGCTTCTGATGAGACGATGAGTAGCTCAATTCAACTTCGTGAAAGATCCAATAGACCCCGTTATAACATTGATGAGTCAGATGATGACGATTCAGTTATTCTCCCTAGCAGCCATGGGAAATCTCCAGAAAAAGATGTGAAAGTGAATGAAAAGGATTCTAATGTGGGAGGCTCAGTTCAAGGGCCTCGAAGAGGGGCCAGACAAAGGAAGCCAAAATATGTTAATGATGAATCTGATAACGACGATTCAGATCTTTTGCCTAGGAAACGCGGGAGACCTAAACTTAAAGTTTCAAAAGCTGATAGTAATGTGGGTAGCTTGGCTATGGAGCTTCGTGAAAGATCCAGTGTAAGGAAGCCAAATTATAATGTTGATGAGTTAGATGAAGATTTGGATATTTTGCCCCCCAAACCTACCTTACCTGAAGAGAACATTGGGAAAATTGATAGAAGTGATACTGTTAGCCCACTGAGTGGTATTGACAAGATATTAGCTTGTGAGACGCGTGCTGTAGTAGCTGGTGAAAGTGATACAACAAAGTTGGGGTCAAATCCTGGAGAGAGTGTGAAACAATATCTTGTGAAGTGGAAGGAACTCTCATATTTGCACTGCACGTGGGTTCCAGAGGGAGAGTTTTTGAAGGCTTTCAAGAATCATCCAGGTCTAAAGATCAAAGTAAACCACTTCCATCGTCGTATGGCGTCAGCTAATAACCCTGATGAGGATGTTGTTGCCATTAGACCTGAATGGAAAATGGTTGATCGAGTACTTGCTTGCAGGGGGGACAATGATAAGAAGCAATATCTTGTGAAGTGGAAAGAGCTTTCATATGATGAGTGCAATTGGGAGCTGGAGTCAGATCTGTCTGCATTCCAACCAGAAATAGAAAGATTTAAGACATTTCAGTCTAGATCAAGGAGAACTTTGTCTAGCAAGAAAAGTAGTGGATTTGAGGATGGCTTTGGACCGAGTAAGCAGCAGCAAGAATTTCTACAGTACGAATTCAGCCCTGAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTACGGTTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAGAGTATTGCTTTCTTAGCATCACTTTTTGAAGAGAATGTTTATCCACATCTGGTGGTTGCTCCACTTTCAACATTACGAAACTGGGAGCGTGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTGCTAAAGCTCGTGGTTGTATCAGAGAGTATGAGTTTTACTTTCCGAAGGTTCAGAAGAAGAAGAATACGAAAAAGAAATCTAAAAAGATTGTTGATGGAAACAAACAAGAAAGGATAAAGTTTGATGTTCTTTTGACTTCATATGAGATGATAAATTCTGATTCATCATCGTTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAGGGTCACCGTCTCAAGAATAAGGATTCTAAATTATATTCTGAACTGAAGCAGTATTCCAGCAAGCATCGGGTTCTTTTAACCGGAACTCCTCTGCAGAACAATTTGGATGAACTATTTATGCTGATGCATTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCGAGAGGAGCAGATTTTGAGACTTCATAAAATGTTGGCACCACACCTTTTGCGAAGAATGAAGAAGGATGTCATGACAGAACTACCTTCAAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGTCGACAGAAAGAATATTACAAGGCAATTTTGACTCGTAATTATGAGATATTAACCCGCCAAGGTGGTGCACATATTTCTCTAATCAATGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTATATGTTAGAAGGGATTCAACCAGATCTTAATGAGGCAAATGACTCATACAAGCAATTTCTTGAATCGTCTGGGAAGTTGCAATTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAGCATGCTGGATTTGCTTGAAGATTACTGTTTTTACAAGCGTTGGCACTATGAGAGGATAGATGGGAAAGTTGCAGGAGCTGAAAGACAAGTGCGGATAGATCGGTTCAATGCTGAAAATTCTAAAAGATTTCTTTTTCTTCTTTCCACTAGAGCAGGTGGATTGGGGATAAACCTTACTACAGCTGACACAGAAGAGTTAGATGATATCGTAAGATATGGCTCAAAGGAGTTATTTGCTGATGAAAATGATGAAGTCGGCAAATCTCGCCAAATTCATTATGATGATGATGCAATAGACAGATTGCTGGATCGTGATCAAGTTGGAGATGAGGAGGCTGCTTTGGATGGTGAAGAGGAAGATGGATTTCTGAATGCCTTTAAGGTGGCAAATTTCGAATACATCGAAGAAGTTCTGCCAGCAGAGGAGGTGCCACAAGATGGAGCAAAGAAGGAACAATCCTCTGCCACCAGTTTGAAAGGAACAGATTACTGGCAAGAGTTGTTGAAAGACCGATATGAAGGGTTTAAAGGTGAAGAGTTAAATGCCTTAGGCAAAGGGAAGCGAGAACGCAAAAGGTTGCTGGGGGAAGGTTGTAGTGGTTTGGAAGATCTAAGCTCTGATGGTGAAGATAAAAGTGAGGATAAAAATTATGAAGTGGATCCTAGTGATGATGATTCAAATTCAATTGAGACTACTCCTACAAGAAGGTCTCAGAAAAACAAAGCTCGCGCATATAGCCCAGAGGAAATTCCTTTAATGGAAGGTGCAGAAAAAGCGATGAAAGTACTTGGATTCAGCCAACATCAAAGGGGTCTTTTTGTTCAAATGACAATGAGGTTTGGGTTTGCTGATTATGATTGGAAAGAGATTGCTTCCCGCATGAAGCGGAAGAGTATCGAAGAAATCCATGAGTATGGAAAACTTCTTATGTCTCATCTTTCAGAAGAAACCAATGATTTGCCTACCTTCGAAGATGGGGTGCCAAAAGAAGGACTTTCAGCAGACGAGCTGCATGTAAGGAATGGAATTATGTCCTTGATAAGAGAAAAAGGCGTAGATTTCACGCGCCTGGATAGAGCACGCAAAGACGCGGTGCGTAGCCGCCATTTGGCCTCCGTGGCTGGTTGGGTTGGCTGTTGTTCTGCGAGACATCAAATCCGGTGCTTGCTTGAGAGAAAGACGGTGGCTGGCAATGGCAGACGGCAAAAAACGACGGCTGACGGCGACGGTGGACCTCGGGTGAAGTTTGCATCAGAAAATCCTGGAACACCACTTTTTTCACCTCTGCTCGCATTACCAAGCGATGGAGATTCCATGATGGTTGCAAATATATGGAAAGACGAGCATGATGTATTGTTACTGAAAGCTGTGTTGAAGCATGGCTATGAAAGGTGGATTGATATGCTTCGCGATGATGATCTGAAGATTCTGAAGTTCATCTGTGAGGAGTTGAGAATTCCAATTCCAATTTTACCAGTTCGAATTATAAATGTTGAGAGCACCTTCCCCAAGAAGAAAGGCCCGGGGAGAACAGCGCTTTCGTTTATAAAAGATAGGTTTTATCTTTTGGAAAAATATCTTTGCGCTGAGAACATGACAGATTACCCTCTATCTGCATTGCGCTCCATGATTTGTTCGAAAACAGGAAGCGGAAGCGTGTTGAAAGTTAAAGGATCTGGACGAAAAAAAAGTAATCGCAAGGCTAAGAATGTAACAAAGTCTGATGCTGTCAAAAATGTTCAGAAAGAAATGTGTAAGTCTGCATATGATAAAAAACGAGAGCGTCTGCTATTAGGTCTTCTTTTCAATCAGATGTGCAAGATTGTGGACGAAAACACGTATCAGATATTTGTTGTACTTTGGAGTCTTGTTCAAGAGATGCATAAAGACATTGGAAACTGA 4341 0.4103 MRATAAATTPSVITVTETNDMKNSRSTAERGPRRRRVRKRSRSTAERGPRRRRVRKSSQQLIFTPFSTFAVHFATVSDVVSLSILSEFQLVLYFSIPLLLMLYEFFCVLENMIMEPCMASDETMSSSIQLRERSNRPRYNIDESDDDDSVILPSSHGKSPEKDVKVNEKDSNVGGSVQGPRRGARQRKPKYVNDESDNDDSDLLPRKRGRPKLKVSKADSNVGSLAMELRERSSVRKPNYNVDELDEDLDILPPKPTLPEENIGKIDRSDTVSPLSGIDKILACETRAVVAGESDTTKLGSNPGESVKQYLVKWKELSYLHCTWVPEGEFLKAFKNHPGLKIKVNHFHRRMASANNPDEDVVAIRPEWKMVDRVLACRGDNDKKQYLVKWKELSYDECNWELESDLSAFQPEIERFKTFQSRSRRTLSSKKSSGFEDGFGPSKQQQEFLQYEFSPEFLSGGALHSYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVYPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAKARGCIREYEFYFPKVQKKKNTKKKSKKIVDGNKQERIKFDVLLTSYEMINSDSSSLKPIKWECMIVDEGHRLKNKDSKLYSELKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVMTELPSKKELILRVELSSRQKEYYKAILTRNYEILTRQGGAHISLINVVMELRKLCCHPYMLEGIQPDLNEANDSYKQFLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQSMLDLLEDYCFYKRWHYERIDGKVAGAERQVRIDRFNAENSKRFLFLLSTRAGGLGINLTTADTEELDDIVRYGSKELFADENDEVGKSRQIHYDDDAIDRLLDRDQVGDEEAALDGEEEDGFLNAFKVANFEYIEEVLPAEEVPQDGAKKEQSSATSLKGTDYWQELLKDRYEGFKGEELNALGKGKRERKRLLGEGCSGLEDLSSDGEDKSEDKNYEVDPSDDDSNSIETTPTRRSQKNKARAYSPEEIPLMEGAEKAMKVLGFSQHQRGLFVQMTMRFGFADYDWKEIASRMKRKSIEEIHEYGKLLMSHLSEETNDLPTFEDGVPKEGLSADELHVRNGIMSLIREKGVDFTRLDRARKDAVRSRHLASVAGWVGCCSARHQIRCLLERKTVAGNGRRQKTTADGDGGPRVKFASENPGTPLFSPLLALPSDGDSMMVANIWKDEHDVLLLKAVLKHGYERWIDMLRDDDLKILKFICEELRIPIPILPVRIINVESTFPKKKGPGRTALSFIKDRFYLLEKYLCAENMTDYPLSALRSMICSKTGSGSVLKVKGSGRKKSNRKAKNVTKSDAVKNVQKEMCKSAYDKKRERLLLGLLFNQMCKIVDENTYQIFVVLWSLVQEMHKDIGN* 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00660 1446 Gene3D - 455 706 IPR038718 -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 1039 1053 - -
Lapu8g00660 1446 CDD CD1_tandem 278 349 - -
Lapu8g00660 1446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 790 964 IPR001650 -
Lapu8g00660 1446 CDD SF2_C_SNF 785 876 - -
Lapu8g00660 1446 CDD CD2_tandem 367 417 - -
Lapu8g00660 1446 Gene3D - 707 876 IPR027417 -
Lapu8g00660 1446 Pfam Helicase conserved C-terminal domain 787 876 IPR001650 -
Lapu8g00660 1446 Gene3D - 1244 1349 - -
Lapu8g00660 1446 Gene3D - 275 352 - -
Lapu8g00660 1446 Coils Coil 667 687 - -
Lapu8g00660 1446 Pfam Chromo (CHRromatin Organisation MOdifier) domain 300 334 IPR023780 -
Lapu8g00660 1446 Pfam Chromo (CHRromatin Organisation MOdifier) domain 370 417 IPR023780 -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 1011 1062 - -
Lapu8g00660 1446 SMART DUF1087_2 956 1026 IPR009463 -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 187 209 - -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 1017 1035 - -
Lapu8g00660 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 697 IPR027417 -
Lapu8g00660 1446 Pfam CHD subfamily II, SANT-like domain 1047 1166 IPR009462 GO:0003677|GO:0006338
Lapu8g00660 1446 Gene3D - 358 418 - -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 135 169 - -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 1 22 - -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 31 56 - -
Lapu8g00660 1446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 475 662 IPR014001 -
Lapu8g00660 1446 SMART chromo_7 275 339 IPR000953 -
Lapu8g00660 1446 SMART chromo_7 367 421 IPR000953 -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 1 56 - -
Lapu8g00660 1446 SMART DUF1086_2 1026 1176 IPR009462 GO:0003677|GO:0006338
Lapu8g00660 1446 Pfam CHD subfamily II, DUF1087 954 1006 IPR009463 -
Lapu8g00660 1446 MobiDBLite consensus disorder prediction 128 219 - -
Lapu8g00660 1446 SUPERFAMILY Chromo domain-like 357 418 IPR016197 -
Lapu8g00660 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 876 IPR027417 -
Lapu8g00660 1446 ProSiteProfiles Chromo and chromo shadow domain profile. 276 359 IPR000953 -
Lapu8g00660 1446 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 135 876 - -
Lapu8g00660 1446 SUPERFAMILY Chromo domain-like 269 353 IPR016197 -
Lapu8g00660 1446 Pfam SNF2-related domain 483 764 IPR000330 GO:0005524|GO:0140658
Lapu8g00660 1446 ProSiteProfiles Chromo and chromo shadow domain profile. 369 431 IPR000953 -
Lapu8g00660 1446 SMART ultradead3 459 673 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00660 Lapu-Chr8 24463653 24487087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00660 776 874 RAD5 or RAD16-like Gene Family AT5G22750 32.323 4.43e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu8g00660 SNF2_N 6.5e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00660 K11643 - jre:109012849 1190.64