Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00635 ATGGGGAAGCCGGCGGGTAAAAAGAAAGATCAGGAGACTCCCGCTCCCGCTACCGCTACCGCTACGAAGGCGAACGGTCACCACCCGACAAAATCATGGGAAGAAAAACGCGGCGCTTCGACGTCGTCGTCGTCGAAGGTGTTGGACGAGGACACGGCGATGTTCATAATCATGTCGCAGGAGCTTCGAGAGGAAGGGAACAGGTTGTTTCACAGGAAGGACAGCGAGGGAGCGATGTTGAAGTACGAAAAGGCCCTCAAGCTTCTGCCGCGGAACCACATCGATATGGCGCACCTCCACACGAGCATGGCCATGTGCTACATGCAGATGGGGCTGGGCGAGTACCCACGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCACGCTACACGAAGGCGCTGCTGAAGCGGGCGAAGTGCTACGAGGCGCTGAACCGTCTGGACCTGGCGATGCGCGACGTGCGCGTGGTGCTGAATTTGGAGCCCAATAACTCGACCGCGTTGGAGGTTTTGGATAGCTTGAGGGAGACGGTGGAAGAGAAGGGGATTGTGATTGACGAGACGGAGATCGCCCTCGCCGCGCTGCAGCAGCATCCGGAGCCGCCTTCGGCGCGGCTGAGGAAGGTGGTGCGGGAGAAAATCAAGAAAAATAAGAAGGAAATCAAGGGGGAGGATGAGGGAAAGGCGAAAAAGACTATCGTTGAAGAGAAGGTTAAGGTTGAGAATGTTAGAAAAAAGGAGAAAGGGAAATTGGGGAAGGAAGAAAAAGGGAAATTGGGGAAGGATGAAAAAGGGAAAGAGGGGAGGGAAGAGAAAGGGAAATTGGGGAAGGAAGAAAAAGAGAAATTGGGGAAAGAAGAAAATGGGGTTGTCACTAGGACTGTGAAGTTGATATACGGAGAGGATATTAGATGGGCGCAATTGCCTGTGAAATGTGGAATTAAGTTGGTGAGGGATGTGATAAGGGATAGGTTTCCTGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAGGGTGATTTGGTTACTATAACTAATACTGCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGGTCGATTAGGCTTTATGTGACTCAGGTTGAGCCGGATAAGGAGCCGTTGTATGATGATGGGGGTGTGGCGGATGGTGGGAAGGTGAAGGTGGTTGAGAATGGGAATGGGGGTGTGGGGAAAGGGGTGAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGGTTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATACAGTGACAAGTGAGGCTGCTCAGGAGCTGTTTGAGATTGCTGGGGATAGGTTTCAGGAGATGGCAGCTTTGGCTTTGTTCAATTGGGGGAGTGTGCACATGTCAAGAGCTAGGAAGGGGGTGAGTTTTCCGGAGGATGGATCGAAGGATTCTTCGTTTGAGAGTGTTCAGGCAGCGTATGAATGGGCTCAGAAGGAGTATATGAATGCAGAGAAGAGATTTGGGGAGGCTGTGAAGATCAAACCGGATTTTTATGAAGGGCTTCTCGCTCTGGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGACTGCGAACGAGAAGGATTTAGAAGCCAGCCATTCGGATGAGGTTCTGCAGCTCTATAACAAGGCTGAGGACAGCATGGAGAAAGGCATGCTGATGTGGGAGGAGACGGAGGAGCGGCGATTGAATGGACTATCCAAATCGGATAAGTATAAAGAGCAGCTAGAGAAAATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTGTTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTACAAGCTAGGCCTGCCAACATGGGAGGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTGGCTGGCGCTTCTACAACTGATATTGGGGTCATGATAAAGAACCATTGCTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCCTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCGTTGTTCCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA 2223 0.4989 MGKPAGKKKDQETPAPATATATKANGHHPTKSWEEKRGASTSSSSKVLDEDTAMFIIMSQELREEGNRLFHRKDSEGAMLKYEKALKLLPRNHIDMAHLHTSMAMCYMQMGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRETVEEKGIVIDETEIALAALQQHPEPPSARLRKVVREKIKKNKKEIKGEDEGKAKKTIVEEKVKVENVRKKEKGKLGKEEKGKLGKDEKGKEGREEKGKLGKEEKEKLGKEENGVVTRTVKLIYGEDIRWAQLPVKCGIKLVRDVIRDRFPGLKGVLVKYKDREGDLVTITNTAELRLAETCHVLGSIRLYVTQVEPDKEPLYDDGGVADGGKVKVVENGNGGVGKGVSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDTVTSEAAQELFEIAGDRFQEMAALALFNWGSVHMSRARKGVSFPEDGSKDSSFESVQAAYEWAQKEYMNAEKRFGEAVKIKPDFYEGLLALGHQQFEQARLCWCYLTANEKDLEASHSDEVLQLYNKAEDSMEKGMLMWEETEERRLNGLSKSDKYKEQLEKMGLHGLFRDVSVDEADEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00635 740 MobiDBLite consensus disorder prediction 251 285 - -
Lapu8g00635 740 SMART tpr_5 59 92 IPR019734 GO:0005515
Lapu8g00635 740 SMART tpr_5 499 532 IPR019734 GO:0005515
Lapu8g00635 740 SMART tpr_5 133 166 IPR019734 GO:0005515
Lapu8g00635 740 SMART tpr_5 97 132 IPR019734 GO:0005515
Lapu8g00635 740 ProSiteProfiles PB1 domain profile. 294 372 IPR000270 GO:0005515
Lapu8g00635 740 Gene3D Tetratricopeptide repeat domain 57 184 IPR011990 GO:0005515
Lapu8g00635 740 PANTHER PROTEIN CLMP1 1 738 IPR044517 -
Lapu8g00635 740 SMART PB1_new 294 372 IPR000270 GO:0005515
Lapu8g00635 740 CDD PB1 296 369 - -
Lapu8g00635 740 MobiDBLite consensus disorder prediction 1 46 - -
Lapu8g00635 740 Pfam PB1 domain 294 371 IPR000270 GO:0005515
Lapu8g00635 740 Gene3D - 287 371 - -
Lapu8g00635 740 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Lapu8g00635 740 SUPERFAMILY CAD & PB1 domains 292 380 - -
Lapu8g00635 740 ProSiteProfiles TPR repeat profile. 133 166 IPR019734 GO:0005515
Lapu8g00635 740 SUPERFAMILY TPR-like 60 547 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00635 Lapu-Chr8 24102155 24105826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00635 49 166 Calmodulin-binding Proteins AT3G25230 28.346 3.53e-07 51.6