Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00593 ATGTCATCAAGCCGAAGAAGGAAGACCAAAAGGATGTTTGGAATATGTGGTCGTAACGATGAGAATGTTGGGGATGATAATGTAAACGAGCGAGAGATTGAAGCCAGAGAAGATGGCAGCCAATACAGCCTCACAGGTGTTCTTCTTCCTTCTCTCGGTGCCACCACCGTCAACAGCGGTAGTCGCAAACCAAAGCTTCAATCTAATATCATCTCTCCATATAATCGTCGTTACAGACTATGGACCAAGTTTCTGCTAATATTGGTCTTCTACACAGCTTGGATGTGTCCATTTGAATTTGGTTTCCTTGAGAAATCAAAGGGTGCACTAGCTATAACCGACAATGCTGTAAATGGATTTTTTGCCATTGACATTGTAGTCACCTTCTTCGTTGCTTACCTTGATAAGTCTACTTATCTATTAGTTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCTTGGTTAATTTTGGATGTCATTGCTTGCGTTCCATATGAAGTTGTTCGGAGTATGTTGCCACCTCCTCTTCAGTTATACAGTTACTTGAACATTCTTCGACTTTGGCGTCTCCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGACCGAAGTTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTCTTCGCAGTGCATGCTGCTGCATGTTTTTTCTATTTTCTTGCTGCACGAGATAATCCAGAAAATACATGGCTTGGACTTGTTCCTAAGGCCATTGACCAGAATATGTGGGGACAATATGTAGTAGCTGTATATTGGTCCATAGTCACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTAGCATTTTGTATATGCTCTTCAATCTTGGACTCACCTCATACTTGATAGGCAACATGACCAACATGGTTGTTCACTGGACTGATAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCCATAGGAATCGCTTGCCTACTCGTTTGCAAGAACAAATGTTTGCTCATTTGCTTATGAAGTATAGAACTGATTTAGAAGGACTACAACAACAAGAGATCATTGATTCCCTTCCAAAAGCCATTCATTCTAGTATCTCACACTACCTATTCTTTTCACATGTTGACAAAGTGTACTTGTTCCATGGAGTGTCAAATGACCTACTTTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGACTTTTACATATTCATTACAGGAGCTGCTGATCTTATCATTGAAAATAATGGAATAGAACAGATTGTTGGTGAAGCAAAGCCAGGAGATGTAGTTGGGGAAATAGGAGTCTTATGTTATAAGCCACAATTGTTCACAGTTCGGACCAAGCGATTGAGCCAGATTTTGCGTATGAATCGGACCATATTTCTAAATCTTACTCATTCAAATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCAGCATTTACATGAAGAAGGGAATCCACTGATGAAAGGAATTTTGGTAGAAGTAGAAGCAATGTTGGCTAGGGGAAAAATGGATTTGCCTATCAGTTTATTGTTTGCAGCTAGTAGAGGTGATGATATTTTGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGAATGGAAAGACAGCATTGCATATTGCAGCTTTTAAAGGCAATGAACATTGTGTACTTGTGCTTGTGGAACATGGAGCTAATCCCAACATCAAAGACATGGAAGGAAATTCGCCATTATGGGAAGCAATTAAGGGTGGACATGAAACTGTGATGAGAATTCTTGTAGAAAATGGTGCAGAAATATCATCTCATGATATAGTTGATTTTGCACGATTGGCTATTGAGAAAAACAGCTTAGAAATTTTGAAGGAAATTATTCAACGTGGTGGGGATGTGACACAATGCACAAGTAAAATGACCACACTACTCCATGCTGCAGTGTGCGAAGGAAATGTTGAAATAGTGAAGTACCTTCTAGCGTTGGGAGCAGACATTGATAGACAAGATAGTATTGGCTTGACTGCAAGATCTTTAGCAGAACATCAATGTCATGAAGAAATACTAAACATTTTTAAGAAAATTGGACACAGCCATAAAACAACAAATGGTATCCCTCAAATTGCATCTATTGTTGGTAGGTGTCAAAGTGAACCAACTATACCAGCCATTCCTCAAGCCAACAAACCACCAAATAAAGAACTTACTTGGTTTGATAATCATCAAAGAAGAAGGGTCAGCCCTTTCCACAATTCCTTTTTTGGAATGATGTCATCTGCAAGTTATGATAGAAAAGATTCAACAAGTGCATCTCAAATGAGTCAAACAATTAAAGAGGAGGTGGCAGCAAGAGTAACAGTTAGTTGTCCAGAGAAAGGTGAAGGTGCCAAGAAGCTTCTCTTTTTGCCAGATTCTCTTGAAAAATTGCTACAAATTGGTGCTAAAAGGTTTGGTTGCTCTCCCACCAAAGTATTAACCATAGAAGGAGCTGAAATTGAAGACATAGATGTTATAAGAGATGGTGATCATCTTCTTCTTCTATAG 2634 0.388 MSSSRRRKTKRMFGICGRNDENVGDDNVNEREIEAREDGSQYSLTGVLLPSLGATTVNSGSRKPKLQSNIISPYNRRYRLWTKFLLILVFYTAWMCPFEFGFLEKSKGALAITDNAVNGFFAIDIVVTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIACVPYEVVRSMLPPPLQLYSYLNILRLWRLHRVSAMFARLEKDRSYSYFWVRCCKLTCVTLFAVHAAACFFYFLAARDNPENTWLGLVPKAIDQNMWGQYVVAVYWSIVTLVSVGYGDLHPVNTKEMVFSILYMLFNLGLTSYLIGNMTNMVVHWTDRTKRYRDTVQSASNFAHRNRLPTRLQEQMFAHLLMKYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSHVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFITGAADLIIENNGIEQIVGEAKPGDVVGEIGVLCYKPQLFTVRTKRLSQILRMNRTIFLNLTHSNVGDGTMIINNFLQHLHEEGNPLMKGILVEVEAMLARGKMDLPISLLFAASRGDDILLNQLLKKGSDPNEPDKNGKTALHIAAFKGNEHCVLVLVEHGANPNIKDMEGNSPLWEAIKGGHETVMRILVENGAEISSHDIVDFARLAIEKNSLEILKEIIQRGGDVTQCTSKMTTLLHAAVCEGNVEIVKYLLALGADIDRQDSIGLTARSLAEHQCHEEILNIFKKIGHSHKTTNGIPQIASIVGRCQSEPTIPAIPQANKPPNKELTWFDNHQRRRVSPFHNSFFGMMSSASYDRKDSTSASQMSQTIKEEVAARVTVSCPEKGEGAKKLLFLPDSLEKLLQIGAKRFGCSPTKVLTIEGAEIEDIDVIRDGDHLLLL* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00593 877 PANTHER POTASSIUM CHANNEL AKT1 40 875 IPR045319 GO:0005249|GO:0006813
Lapu8g00593 877 SUPERFAMILY cAMP-binding domain-like 319 514 IPR018490 -
Lapu8g00593 877 ProSiteProfiles KHA domain profile. 814 877 IPR021789 -
Lapu8g00593 877 FunFam Potassium channel KAT3 80 316 - -
Lapu8g00593 877 PRINTS Ankyrin repeat signature 573 588 IPR002110 GO:0005515
Lapu8g00593 877 PRINTS Ankyrin repeat signature 685 699 IPR002110 GO:0005515
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat region circular profile. 669 700 - -
Lapu8g00593 877 ProSiteProfiles cAMP/cGMP binding motif profile. 394 513 IPR000595 -
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Lapu8g00593 877 SUPERFAMILY Voltage-gated potassium channels 73 315 - -
Lapu8g00593 877 Gene3D - 81 315 - -
Lapu8g00593 877 SMART cnmp_10 394 511 IPR000595 -
Lapu8g00593 877 Gene3D Jelly Rolls 362 519 IPR014710 -
Lapu8g00593 877 Pfam Ankyrin repeats (3 copies) 643 700 IPR002110 GO:0005515
Lapu8g00593 877 Pfam Ankyrin repeats (3 copies) 544 634 IPR002110 GO:0005515
Lapu8g00593 877 SUPERFAMILY Ankyrin repeat 542 726 IPR036770 -
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Lapu8g00593 877 CDD CAP_ED 394 499 IPR000595 -
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat region circular profile. 605 636 - -
Lapu8g00593 877 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
Lapu8g00593 877 Pfam KHA, dimerisation domain of potassium ion channel 814 876 IPR021789 -
Lapu8g00593 877 SMART ANK_2a 669 698 IPR002110 GO:0005515
Lapu8g00593 877 SMART ANK_2a 539 568 IPR002110 GO:0005515
Lapu8g00593 877 SMART ANK_2a 572 601 IPR002110 GO:0005515
Lapu8g00593 877 SMART ANK_2a 636 665 IPR002110 GO:0005515
Lapu8g00593 877 SMART ANK_2a 605 634 IPR002110 GO:0005515
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 288 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 306 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 PRINTS EAG/ELK/ERG potassium channel family signature 262 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu8g00593 877 Pfam Cyclic nucleotide-binding domain 414 498 IPR000595 -
Lapu8g00593 877 Gene3D - 541 724 IPR036770 -
Lapu8g00593 877 FunFam Potassium channel KAT2 382 517 - -
Lapu8g00593 877 Pfam Ion transport protein 79 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00593 Lapu-Chr8 23482459 23490363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00593 40 876 Ion Channels AT2G25600 56.994 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00593 K21867 - gmx:100808832 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00593 8 23482459 23490363 Lapu8g00593 8 23482459 23490363 ECH
Lapu8g00593 8 23482459 23490363 Lapu9g01866 9 33496696 33500648 PCT