Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00583 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCATCGGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCGGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAACAGCAACAACAGCAGCAGCAGCCACAACCTCAGCAGTCACAACATCAGCAGCAACAGCAGCAACAACAACAACACATGCAGATGCAACAAATCCTGTTACAGAGGGCTCAACAACAACAACAGCAACAACAACAGCAGCAACAACAGCAACAACAACCACAGCAGCAGCAACAACAACCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGATAGGACTCATCTCTTGAATGGTGGTACAAATGGATTAGTGGGAAATCCTGGCACTGCAAATGCACTGGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCATCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGCGACCAACTCTTGGACCCAAATCATGCTTCAATACTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATCTCTCCACAAGTTCAAGCACGTAGTCAGCAATTACCAGGGTCTAGTCCGGATATAAAGAGTGAGATGAATTCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGCTATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTCACAGGGTTGGAGCAACTACGTTCCGGTCTACTTCAGCAACAGAAACCACCTTTCATACAGTCTCCTCAACAATTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAACAGTTAATTCTGACACAGCAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTGCTTTTCAGCGTAGTGATACAGACATGCTAATGAAGCTGAAACTGGCACACTTGCACCAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGCAGCATGTCAAACTCCTTTAGAGGCAATGATCAGGTTTCAAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCGAGTTCAGCACCCTCGACTCCCTCGACACATACACCTGGTGATGTGATGTCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCACTAATGATGTTTGGCGCTGATGGTGGTGGAACTCTGACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCAGGATGATACGGACCCGAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATGCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTAAAACAGAAAGCTACTCTTGAAGAGCATTCTTCTTTAATCACTGATGTCCGTTTCAGTCCTAACATGCCTCGCCTCGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATTCTCTTCGTACCTTTACAGGTCATTCTTCATCTGTTATGTCACTGGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGGGAAATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGGGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCAGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACACAAGCATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCATGAGCTTAGCTGCAATGGCAATAAGTTTCACTCATGTGTTTTCCATCCGACATATTCTTCGCTGTTGGTAGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGAGTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCAGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTGAAGCTCTGGAAGTGA 2679 0.4476 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQPQPQQSQHQQQQQQQQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQPQHQQPPPQQQQGRDRTHLLNGGTNGLVGNPGTANALATKMYEERLKLPHQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAISPQVQARSQQLPGSSPDIKSEMNSVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTPQHQQQLILTQQNLASPSGSDDNRRLRMLLNNRNMGVTKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGADGGGTLTSPSNQLADVDRFVEDGSLDDNVESFLSQDDTDPRDTVGRCMDVSKGFTFSEINAVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLKQKATLEEHSSLITDVRFSPNMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMSENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 815 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 812 851 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 643 682 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 686 726 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 601 640 IPR001680 GO:0005515
Lapu8g00583 892 SMART WD40_4 768 806 IPR001680 GO:0005515
Lapu8g00583 892 MobiDBLite consensus disorder prediction 90 112 - -
Lapu8g00583 892 MobiDBLite consensus disorder prediction 464 523 - -
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 685 - -
Lapu8g00583 892 SUPERFAMILY WD40 repeat-like 603 892 IPR036322 GO:0005515
Lapu8g00583 892 MobiDBLite consensus disorder prediction 141 182 - -
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 735 IPR001680 GO:0005515
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 731 - -
Lapu8g00583 892 MobiDBLite consensus disorder prediction 417 557 - -
Lapu8g00583 892 Gene3D - 738 892 IPR015943 GO:0005515
Lapu8g00583 892 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Lapu8g00583 892 MobiDBLite consensus disorder prediction 250 270 - -
Lapu8g00583 892 CDD WD40 604 892 - -
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 639 IPR001680 GO:0005515
Lapu8g00583 892 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 892 - -
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 685 IPR001680 GO:0005515
Lapu8g00583 892 SMART Lish 8 40 IPR006594 GO:0005515
Lapu8g00583 892 Gene3D - 586 737 IPR015943 GO:0005515
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Lapu8g00583 892 Coils Coil 117 140 - -
Lapu8g00583 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lapu8g00583 892 MobiDBLite consensus disorder prediction 249 293 - -
Lapu8g00583 892 MobiDBLite consensus disorder prediction 417 453 - -
Lapu8g00583 892 Pfam LisH 10 36 IPR006594 GO:0005515
Lapu8g00583 892 FunFam Transcriptional corepressor LEUNIG 736 892 - -
Lapu8g00583 892 MobiDBLite consensus disorder prediction 141 183 - -
Lapu8g00583 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Lapu8g00583 892 Pfam WD domain, G-beta repeat 771 805 IPR001680 GO:0005515
Lapu8g00583 892 Pfam WD domain, G-beta repeat 613 639 IPR001680 GO:0005515
Lapu8g00583 892 Pfam WD domain, G-beta repeat 855 892 IPR001680 GO:0005515
Lapu8g00583 892 Pfam WD domain, G-beta repeat 689 726 IPR001680 GO:0005515
Lapu8g00583 892 Pfam WD domain, G-beta repeat 647 682 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00583 Lapu-Chr8 23318917 23338053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00583 687 891 Miscellaneous Gene Families AT5G08390 25.238 3.17e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lapu8g00583 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00583 - - gmx:100779972 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00583 8 23318917 23338053 Lapu9g01854 9 33398855 33408419 PCT