Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00576 ATGGATAGAGAGAATGCTGTAATCGGTGGTGGTGGTGCTGTGAGAGACGGTGTTCGAGTGACGCGAGCAATGGCTAGAGCTTTGAGAGAGGTCTCTGCCTCTTCAAGGCCATCCTTTAAGAAAAAACAGCGCAAATTGGACAAGAGCAGCAGAGTAGCGCTGACAGATGTAACTAATGAATGCAGAAAACCGCAGCTCAATAACTGTGCTACATACAACTTTCAGACAAGAGGAGGTTATAAGAAGCGAAACACAAAGGGAGCTTCCAATGTCTCCATGCAAGTTTTGTCAACTCAAGATGTTAGAGCAAACTCAACAACAGATTTATCCTCAATATCGGTGGTGCAGTCACATAATGCTGTTTTTTCTGAAAGAATGGAAGACGGAGAGCTTGTGCAACCTTCTATGTCTGTCATGGCAGGTCCCCTGCTTTCAATGCAGGACTCTATGAAGTCTGATGAACTCCTTGGCTCTCCGAACAAAGATATTGATATGATTTCACAGAAACTAAAACATTCGGATGGATTGGGCATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATATAATAATATACGTATCAGAGAGTTTGAAAGGAGACTAACCGATTACATGGGCGAGCTGCAGAAAGATATCACTCCAAGCATGAGAGCAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGTTAGTTCCAGATACTCTTTACCTTACTGTGAATCTTATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAAGGACTCCAGTTGCTGGGTGTTACTTGCATGCTGATCGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACTGATAATACGTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCAACCGCTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAATACTCTTGTAAGGTTTCTTGTGTTGAAGTGGAATTTCTGGCTAATTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTCGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCAGTATTGCTTGCCAGATGGACCCTCAACCAGTCAGAACATCCGTGGAATGCAACTATGGAGCACTATACAAAATACAAATTGCCAGACCTTAAAACTGCTGTCCTTGCACTGGCCGATTTGCAACTTGATACCAAAGACTGTCCTCTGAATGCTATACGTGAAAAATATAAACAGCAGAAGTTCATGAGTGTGGCAAATTTGTCTCCAAAACCAGTGCAGTCACTTTTTGAGGCTGAAGTATAA 1380 0.4167 MDRENAVIGGGGAVRDGVRVTRAMARALREVSASSRPSFKKKQRKLDKSSRVALTDVTNECRKPQLNNCATYNFQTRGGYKKRNTKGASNVSMQVLSTQDVRANSTTDLSSISVVQSHNAVFSERMEDGELVQPSMSVMAGPLLSMQDSMKSDELLGSPNKDIDMISQKLKHSDGLGIVDIDSVELKDPQVWSSYAPDIYNNIRIREFERRLTDYMGELQKDITPSMRAILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQGLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMESEVLNLLHFQLSVPTAKTFLRRFILAAQYSCKVSCVEVEFLANYLAELTLVEYSFSQFLPSLIAASAVLLARWTLNQSEHPWNATMEHYTKYKLPDLKTAVLALADLQLDTKDCPLNAIREKYKQQKFMSVANLSPKPVQSLFEAEV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00576 459 Gene3D - 198 445 - -
Lapu8g00576 459 SUPERFAMILY Cyclin-like 187 323 IPR036915 -
Lapu8g00576 459 SUPERFAMILY Cyclin-like 325 448 IPR036915 -
Lapu8g00576 459 PIRSF Cyclin_A_B_D_E 14 458 IPR046965 GO:0016538|GO:0044772
Lapu8g00576 459 ProSitePatterns Cyclins signature. 228 259 IPR006671 -
Lapu8g00576 459 FunFam Mitotic cyclin 6 212 311 - -
Lapu8g00576 459 PANTHER CYCLINS 158 437 IPR039361 -
Lapu8g00576 459 CDD CYCLIN_AtCycA-like_rpt2 326 440 - -
Lapu8g00576 459 Gene3D - 212 324 - -
Lapu8g00576 459 SMART cyclin_7 330 418 IPR013763 -
Lapu8g00576 459 SMART cyclin_7 233 317 IPR013763 -
Lapu8g00576 459 SMART Cyclin_C_2 326 449 IPR004367 -
Lapu8g00576 459 FunFam Cyclin A1 313 445 - -
Lapu8g00576 459 Pfam Cyclin, N-terminal domain 198 324 IPR006671 -
Lapu8g00576 459 Pfam Cyclin, C-terminal domain 326 448 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00576 Lapu-Chr8 23196047 23203925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00576 14 455 Core Cell Cycle Gene Families AT5G25380 51.096 4.62e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00576 K06627 - gmx:100777132 679.093