Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00574 ATGGAGCGGCCTGGGAGCTTAAATGGCAGTCAGCATGTTATAGAAATAGCCGGGAGTGGCGATGCTTCTACATCATCTCCGACACATCATGATAGGCATTTTAATGGCCCAGATGTGACTTCGCATGAAGAAAGAATTACCGGTGCAAGGACGCCTCTATCTCAGCCTTCAGTTTCCGTCTCTAGTTTATCTAATGGGTCTAATAGTCGGAATTCCTCATTCATGAGACGCGGGGATACTCGTCGGAATAGGAGTCCTGTGCATTCGGGGTTATGGATATCAATTGAGCTGGTCCTCTTAGTTAGCCAGATTGCTGCATCTATCGTTGTTTTGTCTTTGTCAAGGCATGAACATCCACGTACTCCATTATTTCAATGGATCATTGGTTATGCTTCTGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATAAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACTAATGGTGGGGAAGATAGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGGCATTCGTCTGCTGATGAAGCTCCTAATTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTTGGGGTTAGGGAGGACATGTCTCAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACGTACAAGTTTAAGATGAAGAAAAATAAAAGAAATGGCGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGTGGGAACTGAAAAAGAGCGAGTAATATCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGACGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGCGTGGATAAGTGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAATGATGTTGGTGAGAACCTAACAGGATTGATCTCAGGAGAAGATGCCAACCAACATCGGAGTGAGAGCAGGATTGAAAATGGCCTCACGAATACCCCAGTTTAG 1248 0.4255 MERPGSLNGSQHVIEIAGSGDASTSSPTHHDRHFNGPDVTSHEERITGARTPLSQPSVSVSSLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIAASIVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHIREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEDSQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAVGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENLTGLISGEDANQHRSESRIENGLTNTPV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00574 415 SUPERFAMILY RING/U-box 331 387 - -
Lapu8g00574 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Lapu8g00574 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 387 IPR013083 -
Lapu8g00574 415 MobiDBLite consensus disorder prediction 26 45 - -
Lapu8g00574 415 MobiDBLite consensus disorder prediction 47 74 - -
Lapu8g00574 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Lapu8g00574 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Lapu8g00574 415 Pfam Ring finger domain 340 381 IPR001841 -
Lapu8g00574 415 FunFam E3 ubiquitin-protein ligase 323 389 - -
Lapu8g00574 415 MobiDBLite consensus disorder prediction 395 415 - -
Lapu8g00574 415 SMART ring_2 340 380 IPR001841 -
Lapu8g00574 415 MobiDBLite consensus disorder prediction 15 85 - -
Lapu8g00574 415 CDD RING-H2_EL5-like 340 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00574 Lapu-Chr8 23178305 23186648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00574 76 387 C3H Transcription Factor Family AT1G80400 59.434 9.64e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00574 - - gmx:100778728 731.48