Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00565 ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTCGAGTGCAATGACGTTAAACATATGACTGAGAAGGAAGTGTACCCTCCAGAATCAAATGCAGAAGACTTGCCTGGAGAAGAATCATGTCAATCAACAGACCCCAAAAATATCAATGACTTGCGAGAGAAGGGGTATATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCAAATCAGGGCCCCCTGTTGTAATGAGATTTTTGATTGCCGTCATTGTCACAATGAAGCAAAAAATGATATCAACATTGATCAGAAGCATAGACATGACATTCCTCGGCACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACAGAACAAGATGTTCAGCAGAACTGTATAAGTTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGCGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCGACTGTGCTGGAAAACAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTAACTGTTATGCCATGCGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGGGAGCATTTCCAGTATGCGTGCCCTCTCTGCTCCAAGTCAGTCTGTGATATGTCGAAGGTTTGGGAGAGATATGACCTAGAGATTGCTGCTACACCAATGCCTGAACCATATCAAAATAAAATGGTTTGGATCCTTTGCAATGACTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCGGAAGTGCCTGAATTGCAAGTCCTATAATACACGACAAACATGA 924 0.4275 MGEVAVMHSEPLQFECNDVKHMTEKEVYPPESNAEDLPGEESCQSTDPKNINDLREKGYMEYGCQHYRRRCQIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQDVQQNCISCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTVLENSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWERYDLEIAATPMPEPYQNKMVWILCNDCGKTSHVQFHFVARKCLNCKSYNTRQT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00565 307 Gene3D - 271 307 - -
Lapu8g00565 307 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 46 307 - -
Lapu8g00565 307 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Lapu8g00565 307 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Lapu8g00565 307 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Lapu8g00565 307 SUPERFAMILY RING/U-box 199 248 - -
Lapu8g00565 307 CDD RING-H2_Pirh2-like 199 243 - -
Lapu8g00565 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Lapu8g00565 307 Pfam Ring finger domain 199 242 IPR001841 -
Lapu8g00565 307 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Lapu8g00565 307 SMART ring_2 200 242 IPR001841 -
Lapu8g00565 307 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Lapu8g00565 307 Pfam Zinc-ribbon 247 305 IPR039512 -
Lapu8g00565 307 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00565 Lapu-Chr8 23030015 23037049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00565 62 305 C2H2 Transcription Factor Family AT3G18290 40.400 4.36e-53 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00565 8 23030015 23037049 Lapu9g01832 9 33183312 33195296 PCT