Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00545 ATGTTCTCCAGCTCCCAATTCGATTCGGTCACCGCCTTCTCCGGCGGTGGATTCATGTCCTCTCAGCCGTCTAACATCAACGATTCCTCTACCGCACCGCAAAAAAGCCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAACAGATAAGTGAAGCCTCACAGACCGGTGACGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTTGGGATGGTATTTGAGAAAGTCGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACAGGACGAATAAAATGCCGAAGATGGGTTAATGAAACCTTTGACACAAAAGAAATGGAAGAAGTAATGAATGGTATGTACGTCCGTGTTTTTGGGCATTTAAAAAGCTTCCAAGGTGTTAGGCAGCTTGTTGCTTTCTCTGTCAGGCCCGTGACAAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATGAAGATGGAAGGAATCACTTCTACAAATCCTTCATCTGTCTCATCTTTGAACACTCCTATAAAAAATGTCCCAAATGGATCTCAGGCGCTATCATCAACTCCAGCATATGCACAATATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATGGACTACCTGCAGCAGCATTCAGAAATGTCAGATGAACGTGGAATACATGTCAATGAATTATCCCGGGAGCTCAAGCTTCCAATGGATAGGATCATGTTGTCGCTAAAGACACTTGGAGACGATGGTTTAGTATACTCCACCATCGACGACTACCATTACAAACAAGCTTGA 834 0.4329 MFSSSQFDSVTAFSGGGFMSSQPSNINDSSTAPQKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLRSKMKMEGITSTNPSSVSSLNTPIKNVPNGSQALSSTPAYAQYSVDGLKDCDKLIMDYLQQHSEMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00545 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu8g00545 277 Pfam Replication protein A C terminal 176 271 IPR014892 -
Lapu8g00545 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Lapu8g00545 277 CDD RPA2_DBD_D 72 165 - -
Lapu8g00545 277 Gene3D - 207 277 IPR036388 -
Lapu8g00545 277 Gene3D - 38 169 IPR012340 -
Lapu8g00545 277 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Lapu8g00545 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Lapu8g00545 277 FunFam Replication protein A 32 kDa subunit 208 277 - -
Lapu8g00545 277 MobiDBLite consensus disorder prediction 18 43 - -
Lapu8g00545 277 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Lapu8g00545 277 PANTHER REPLICATION PROTEIN A-RELATED 6 275 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00545 Lapu-Chr8 22789918 22796656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00545 1 275 Core DNA Replication Machinery Family AT2G24490 48.936 2.29e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00545 K10739 - gmx:100802512 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00545 8 22789918 22796656 Lapu8g00545 8 22789918 22796656 ECH